Bioconductor Mirna-seq

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deseq2 rnaseq mirna-seq differential gene expression

written 7.1 years ago by klalit1803 ▴ 10

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1.3k

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mirna-seq limma

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by Michael Stone • 0

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1.2k

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mirna-seq

updated 6.8 years ago by Levi Waldron ★ 1.1k • written 6.8 years ago by ndiayediop2 • 0

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951

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mirna-seq

6.9 years ago • updated 6.8 years ago ndiayediop2 • 0

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3.1k

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r survival analysis rtcga tcgabiolinks mirna-seq

6.8 years ago atakanekiz ▴ 30

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881

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deseq2 differentially expression mirna-seq mirna target prediction

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by Björn • 0

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1.3k

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DESeq2 mirna-seq small RNA-seq

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by CandiceChuDVM ▴ 40

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4.9k

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deseq2 mirna-seq experimental design differential expression

updated 7.9 years ago by Gavin Kelly ▴ 690 • written 7.9 years ago by francesco.gandolfi ▴ 10

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5.2k

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miRNA mirna-seq

updated 8.1 years ago by Jon Bråte ▴ 260 • written 8.1 years ago by just • 0

9 results • Page 1 of 1

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Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR by Gordon Smyth 52k

I don't understand your question, because there is no difference between limma or glmFit or glmQLFit in terms of spline modeling or the tes…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Votes

Limma outputs different results for same sample?

Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

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