Bioconductor Mirna-seq

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deseq2 rnaseq mirna-seq differential gene expression

written 6.7 years ago by klalit1803 ▴ 10

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1.2k

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mirna-seq limma

updated 6.2 years ago by Gordon Smyth 51k • written 6.2 years ago by Michael Stone • 0

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1.1k

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mirna-seq

updated 6.4 years ago by Levi Waldron ★ 1.1k • written 6.4 years ago by ndiayediop2 • 0

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896

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mirna-seq

6.5 years ago • updated 6.4 years ago ndiayediop2 • 0

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2.9k

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r survival analysis rtcga tcgabiolinks mirna-seq

6.5 years ago atakanekiz ▴ 30

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828

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deseq2 differentially expression mirna-seq mirna target prediction

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by Björn • 0

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1.2k

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DESeq2 mirna-seq small RNA-seq

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by CandiceChuDVM ▴ 40

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4.7k

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deseq2 mirna-seq experimental design differential expression

updated 7.6 years ago by Gavin Kelly ▴ 690 • written 7.6 years ago by francesco.gandolfi ▴ 10

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4.9k

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miRNA mirna-seq

updated 7.7 years ago by Jon Bråte ▴ 260 • written 7.7 years ago by just • 0

9 results • Page 1 of 1

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Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

Answer: Epic v2 Annotation CpG_maf source? by James W. MacDonald 67k

Those all come from dbSNP by way of UCSC. [See here][1], particularly lines 114 and onward. Here is no MAF for a CpG. The MAF is for the…

Comment: Deseq2 res Function by James W. MacDonald 67k

In addition to Mike's comment, do note that if you are generating a heatmap based on the set of significant genes, the direction of your co…

Answer: Struggle with the replicates of epic array data by James W. MacDonald 67k

You shouldn't be using beta values for a linear model that assumes a unimodal, untruncated distribution (beta values are strictly on (0-1) …

Votes

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

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