Bioconductor MinfiData

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DNA minfiData minfiDataEPIC DNAMethylation minfi

1 day ago user_bioinfo • 0

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505

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bumphunter minfiData minfi bumphun

updated 7 months ago by James W. MacDonald 68k • written 7 months ago by kumakeren16 • 0

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586

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minfiData minfi

updated 10 months ago by Basti ▴ 780 • written 10 months ago by clacarion • 0

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460

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methylclockData minfi methylclock minfidata

updated 11 months ago by James W. MacDonald 68k • written 12 months ago by sharangiiv • 0

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1.5k

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RnBeads minfiData minfi EPICarray

updated 21 months ago by Basti ▴ 780 • written 21 months ago by Jitendra ▴ 10

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1.6k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by Grace • 0

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1.9k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 23 months ago by Grace • 0

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1.1k

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minfiData ChAMP

3.1 years ago behr201 • 0

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minfi minfiData MethylationArrayData

3.5 years ago ponche_de_kiwi • 0

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2.6k

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minfiData plotsex minfi minfiDataEPIC r

updated 4.0 years ago by suman • 0 • written 4.0 years ago by Bethan • 0

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2.3k

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minfi methylation dataimport minfidata missmethyl

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by moldach ▴ 20

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1.7k

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minfi minfidata rgl. mac os x el capitan

updated 8.8 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.8 years ago by holbrookjoanna • 0

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2.5k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.9 years ago alejandretheodore • 0

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2.2k

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minfi minfidata illumina methylation dmpfinder

updated 10.4 years ago by James W. MacDonald 68k • written 10.4 years ago by michael.zulyniak • 0

14 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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