Bioconductor MinfiData

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425

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bumphunter minfiData minfi bumphun

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by kumakeren16 • 0

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528

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minfiData minfi

updated 8 months ago by Basti ▴ 780 • written 8 months ago by clacarion • 0

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411

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methylclockData minfi methylclock minfidata

updated 9 months ago by James W. MacDonald 67k • written 9 months ago by sharangiiv • 0

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1.4k

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RnBeads minfiData minfi EPICarray

updated 19 months ago by Basti ▴ 780 • written 19 months ago by Jitendra ▴ 10

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1.5k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

updated 21 months ago by James W. MacDonald 67k • written 21 months ago by Grace • 0

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1.7k

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methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray

written 21 months ago by Grace • 0

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1.1k

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minfiData ChAMP

3.0 years ago behr201 • 0

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996

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minfi minfiData MethylationArrayData

3.4 years ago ponche_de_kiwi • 0

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2.5k

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minfiData plotsex minfi minfiDataEPIC r

updated 3.8 years ago by suman • 0 • written 3.8 years ago by Bethan • 0

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2.2k

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minfi methylation dataimport minfidata missmethyl

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by moldach ▴ 20

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1.7k

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minfi minfidata rgl. mac os x el capitan

updated 8.6 years ago by Kasper Daniel Hansen ★ 6.5k • written 8.6 years ago by holbrookjoanna • 0

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2.4k

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minfidata minfi illuminahumanmethylation450k.db illuminahumanmethylation450kanno.ilmn12.hg19

9.7 years ago alejandretheodore • 0

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2.1k

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minfi minfidata illumina methylation dmpfinder

updated 10.3 years ago by James W. MacDonald 67k • written 10.3 years ago by michael.zulyniak • 0

13 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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