Showing : minfi • reset
1
vote
4
replies
276
views
Handling Epic Array Data
minfi
1 day ago • updated 11 hours ago Melisa Tecik • 0
2
votes
2
replies
219
views
preprocessIllumina error with EPICv2 array
minfi EPICv2manifest
2 days ago • updated 1 day ago Rakesh • 0
2
votes
5
replies
443
views
dmpFinder for other objects
methylset minfi dmpFinder betaHMM beta
updated 6 weeks ago by 67k • written 6 weeks ago by • 0
0
votes
2
replies
450
views
DMPs enrichment for MOUSE DNA methylation array
minfi mCSEA missme missMethyl
updated 3 months ago by • 0 • written 3 months ago by • 0
3
votes
12
replies
3.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 3 months ago by ▴ 200 • written 12 months ago by ▴ 10
0
votes
1
reply
397
views
minfi - bumphunter value problem
bumphunter minfiData minfi bumphun
updated 4 months ago by 67k • written 4 months ago by • 0
0
votes
0
replies
346
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi EPICv2manifest MethylAid
4 months ago pcibin • 0
0
votes
2
replies
572
views
Epicv2 conversion fail
minfi
5 months ago • updated 4 months ago Alex • 0
2
votes
2
replies
1.1k
views
minfi latest update for EPIC V2 chip
minfi minfiDataEPIC
updated 5 weeks ago by • 0 • written 6 months ago by • 0
1
vote
4
replies
495
views
minfi::read.metharray.exp
minfiData minfi
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
0
votes
4
replies
582
views
Minfi - estimatecellscount
min minfi
updated 6 months ago by 67k • written 7 months ago by • 0
0
votes
0
replies
509
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
8 months ago Felix • 0
0
votes
1
reply
385
views
Matrix multiplication error to estimate telomere length
methylclockData minfi methylclock minfidata
updated 8 months ago by 67k • written 8 months ago by • 0
0
votes
7
replies
875
views
error in reading idat files and creating rgset
minfi MethylationArray
updated 9 months ago by 67k • written 9 months ago by • 0
1
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2
replies
1.6k
views
EPIC array hg38 annotation?
minfi DMRcate
9 months ago mycetes • 0
0
votes
0
replies
574
views
Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
11 months ago kyj2226 • 0
3
votes
2
replies
870
views
What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
11 months ago kyj2226 • 0
0
votes
1
reply
628
views
Error in reading my csv file in minfi
minfiDataEPIC minfi
updated 12 months ago by ▴ 780 • written 12 months ago by • 0
0
votes
5
replies
1.4k
views
minfi, limma, adjusting for cell counts - integrating the resoults of estimateCellCounts into the linear regression model
minfi limma
13 months ago dorota.komar • 0
0
votes
2
replies
1.1k
views
minfi differential methylation analysis errors
minfi
13 months ago matthew.sinton • 0
0
votes
3
replies
975
views
minfi bumphunter - probe IDs
minfi bumphunter
updated 13 months ago by ▴ 780 • written 13 months ago by • 0
0
votes
14
replies
3.2k
views
Error while preprocessing raw data from methylation array using minfi package
minfi
updated 9 months ago by • 0 • written 14 months ago by • 0
0
votes
1
reply
622
views
Two EPIC Methylation Array Analysis Questions
minfiDataEPIC minfi
updated 15 months ago by 67k • written 15 months ago by • 0
0
votes
3
replies
1.3k
views
Batch correction using control probes in EPIC array data
RnBeads minfiData minfi EPICarray
updated 18 months ago by ▴ 780 • written 18 months ago by ▴ 10
0
votes
2
replies
789
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 8 months ago by • 0 • written 18 months ago by • 0
0
votes
1
reply
723
views
LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 19 months ago by 51k • written 20 months ago by • 0
0
votes
0
replies
569
views
cpgCollapse error
450K blockfinder cpgCollapse minfi
20 months ago edward.esiribloom • 0
6
votes
6
replies
8.2k
views
minfi support of illumina Infinium methylationEPIC v2.0
methylationEPICv2.0 minfi
updated 6 weeks ago by • 0 • written 20 months ago by ▴ 50
0
votes
1
reply
846
views
specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 20 months ago by 67k • written 20 months ago by • 0
0
votes
4
replies
1.4k
views
Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 20 months ago by 67k • written 20 months ago by • 0
1
vote
3
replies
1.2k
views
Analysing Genome Studio .txt files with minfi
minfi
updated 20 months ago by 67k • written 20 months ago by • 0
0
votes
5
replies
1.7k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 20 months ago by • 0
0
votes
1
reply
1.0k
views
Minfi::read.metharray.sheet, problem with pattern defined in non-local csv file
PatternLogic read.metharray.sheet list.files minfi
updated 21 months ago by 67k • written 21 months ago by • 0
2
votes
3
replies
1.4k
views
GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 22 months ago by ▴ 40 • written 22 months ago by • 0
0
votes
1
reply
1.3k
views
minfi read.metharray.sheet error
minfi
updated 23 months ago by 67k • written 23 months ago by • 0
0
votes
1
reply
1.3k
views
Density Plot using Noob Normalisation vs Quantile Normalisation
Quantile noob Normalization minfi minfiDataEPIC
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
0
votes
0
replies
709
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation wateRmelon Computation minfi
2.3 years ago calen.p.ryan • 0
0
votes
0
replies
892
views
Error: 'bumphunter()' only supports matrix-backed minfi objects.
bumphunter minfi genomi
2.4 years ago runye • 0
0
votes
1
reply
1.2k
views
what is the format of DMPfinder in minfi package
minfi
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
3
replies
1.4k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.6 years ago • updated 2.5 years ago ramonfallon ▴ 20
0
votes
2
replies
3.1k
views
Illumina 450k Manifest: Probes Mapping to Multiple RefGene Groups and Names
illuminahumanmethylation450kanno.ilmn12.hg19 minfi illuminahumanmethylation450k.db methylation
updated 2.6 years ago by • 0 • written 9.1 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Annotation Illumina Infinium Mouse Methylation
Illumina minfi IlluminaHumanMethylationEPICmanifest
2.6 years ago octaviompa • 0
0
votes
0
replies
778
views
Minfi package: controlStripPlot colors
minfi
2.7 years ago Rebecca • 0
0
votes
1
reply
1.1k
views
Over 800,000 probes failing to meet Detection P-value - minfi
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 failingprobes detectionP minfi
updated 2.8 years ago by 67k • written 2.8 years ago by • 0
0
votes
9
replies
3.6k
views
clarification about bumphunter value output
minfi bumphunter
updated 18 months ago by • 0 • written 6.7 years ago by • 0
0
votes
1
reply
1.1k
views
EPIC ARRAY ANALYSIS
minfiDataEPIC #SexPrediction minfi
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
0
votes
0
replies
967
views
minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.3 years ago ponche_de_kiwi • 0
3
votes
6
replies
2.1k
views
Minfi can't combineArrays
RGset combinearrays 450k minfi
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
0
votes
0
replies
920
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi limma lmm lmfit dmpFinder
3.5 years ago kyleyxw • 0
2
votes
2
replies
1.1k
views
How to overcome issue linked to loading big R object
minfi R methylation
3.6 years ago Federica ▴ 10
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
Awards • All
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to Gordon Smyth 51k
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Scholar to James W. MacDonald 67k
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