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Showing :
mfuzz
•
reset
3
votes
6
replies
1.3k
views
Average biological replicates in RNA-seq
Mfuzz
RNASeq
11 months ago
boczniak767
▴ 740
0
votes
0
replies
555
views
Mfuzz package loading issues
Mfuzz
MacBook
loadingissues
15 months ago
Jon
• 0
0
votes
4
replies
1.1k
views
Mfuzz package loading issues
Mfuzz
loadingissues
macbook
15 months ago
Jon
• 0
0
votes
2
replies
1.1k
views
R: problem with running time-series analysis software: Mfuzz
time-series
mfuzz
replace=FALSE
2.7 years ago
soda
▴ 80
1
vote
1
reply
725
views
Fuzzy C means clustering
Mfuzz
updated 4.2 years ago by
James W. MacDonald
67k • written 4.2 years ago by
syed.imtiazaziz
• 0
0
votes
0
replies
815
views
Mfuzz time-series design
mfuzz
normalization
5.6 years ago
xizhang
• 0
3
votes
9
replies
3.0k
views
DESeq2 Normalized Counts for Mfuzz
deseq2
rnaseq
mfuzz
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
rbenel
▴ 40
0
votes
0
replies
1.1k
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
6.6 years ago
prakashpandey1111
• 0
0
votes
0
replies
785
views
For optimal c and m using fuzzy c-means clustering
mfuzz
6.6 years ago
prakashpandey1111
• 0
1
vote
1
reply
1.5k
views
expression profiles between DESeq2 and Mfuzz
deseq2
mfuzz
differential expression
timecourse
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
2.3k
views
cluster composition in Mfuzz package
cluster
mfuzz
gene names
updated 8.9 years ago by
Assa Yeroslaviz
★ 1.5k • written 8.9 years ago by
thomas.dobrenel
• 0
1
vote
1
reply
5.7k
views
Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA
mfuzz
clustering
bioinformatics
proteomics
timecourse
updated 8.9 years ago by
Laurent Gatto
1.6k • written 8.9 years ago by
under-waterworld
• 0
0
votes
0
replies
1.2k
views
Small bug in mfuzz.plot
Mfuzz
9.0 years ago
musically.ut
• 0
0
votes
0
replies
1.6k
views
mfuzz problems
Clustering
Mfuzz
Clustering
Mfuzz
10.7 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
1.2k
views
[Mfuzz] y-axis values
Clustering
Mfuzz
Clustering
Mfuzz
13.8 years ago
boczniak767
▴ 740
0
votes
3
replies
4.3k
views
[Mfuzz] Error in cmeans(exprs(eset)
Mfuzz
Mfuzz
updated 8 months ago by
Caio
• 0 • written 13.8 years ago by
boczniak767
▴ 740
0
votes
1
reply
1.8k
views
Mfuzz plot -pdf
Mfuzz
Mfuzz
updated 15.8 years ago by
James W. MacDonald
67k • written 15.8 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.5k
views
Mfuzz package
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.8 years ago by
James W. MacDonald
67k • written 15.8 years ago by
dorothyc
▴ 140
0
votes
4
replies
6.5k
views
Heatmap without using clustering result
Clustering
Mfuzz
Clustering
Mfuzz
updated 15.9 years ago by
Steve Pederson
▴ 60 • written 15.9 years ago by
gregory voisin
▴ 430
19 results • Page
1 of 1
Recent ...
Replies
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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