Bioconductor Mfuzz

Showing : mfuzz • reset

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1.4k

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Mfuzz RNASeq

12 months ago boczniak767 ▴ 740

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587

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Mfuzz MacBook loadingissues

16 months ago Jon • 0

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1.2k

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Mfuzz loadingissues macbook

16 months ago Jon • 0

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1.1k

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time-series mfuzz replace=FALSE

2.8 years ago soda ▴ 80

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754

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Mfuzz

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by syed.imtiazaziz • 0

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834

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mfuzz normalization

5.7 years ago xizhang • 0

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3.1k

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deseq2 rnaseq mfuzz

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by rbenel ▴ 40

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mfuzz fold change log2 STANDARDISATION

6.7 years ago prakashpandey1111 • 0

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808

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mfuzz

6.7 years ago prakashpandey1111 • 0

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1.6k

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deseq2 mfuzz differential expression timecourse

updated 8.4 years ago by Michael Love 43k • written 8.4 years ago by Assa Yeroslaviz ★ 1.5k

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2.4k

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cluster mfuzz gene names

updated 8.9 years ago by Assa Yeroslaviz ★ 1.5k • written 8.9 years ago by thomas.dobrenel • 0

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5.8k

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mfuzz clustering bioinformatics proteomics timecourse

updated 9.0 years ago by Laurent Gatto 1.6k • written 9.0 years ago by under-waterworld • 0

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Mfuzz

9.1 years ago musically.ut • 0

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1.6k

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Clustering Mfuzz Clustering Mfuzz

10.8 years ago Assa Yeroslaviz ★ 1.5k

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1.2k

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Clustering Mfuzz Clustering Mfuzz

13.9 years ago boczniak767 ▴ 740

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4.4k

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Mfuzz Mfuzz

updated 10 months ago by Caio • 0 • written 13.9 years ago by boczniak767 ▴ 740

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1.8k

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Mfuzz Mfuzz

updated 15.9 years ago by James W. MacDonald 68k • written 15.9 years ago by dorothyc ▴ 140

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1.6k

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Clustering Mfuzz Clustering Mfuzz

updated 15.9 years ago by James W. MacDonald 68k • written 15.9 years ago by dorothyc ▴ 140

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6.6k

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Clustering Mfuzz Clustering Mfuzz

updated 16.0 years ago by Steve Pederson ▴ 60 • written 16.0 years ago by gregory voisin ▴ 430

19 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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