Showing : methylationarrayanalysis • reset
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
6 days ago • updated 5 days ago a.alkema • 0
0
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1
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137
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 18 days ago by 68k • written 18 days ago by • 0
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13
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1.2k
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When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 4 months ago by ▴ 20 • written 5 months ago by ▴ 10
1
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2
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617
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
5 months ago ramiro.barrantes ▴ 10
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1
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365
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 5 months ago by 68k • written 5 months ago by ▴ 10
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1
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571
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 10 weeks ago by • 0 • written 7 months ago by • 0
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7
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1.6k
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
9 months ago hortense96 • 0
1
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1
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1.2k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 11 months ago by 68k • written 11 months ago by • 0
1
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4
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1.2k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
12 months ago mikat • 0
2
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4
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1.3k
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 14 months ago by 52k • written 14 months ago by • 0
3
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6
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1.2k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
15 months ago aldea85 • 0
0
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1
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1.1k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 16 months ago by 68k • written 16 months ago by • 0
1
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3
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951
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 17 months ago by 68k • written 18 months ago by • 0
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1
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3.7k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 18 months ago by ★ 4.6k • written 18 months ago by ▴ 10
1
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2
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905
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
19 months ago Krzysztof • 0
1
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2
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1.1k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
20 months ago Irene • 0
1
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1
reply
818
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 21 months ago by ▴ 40 • written 21 months ago by • 0
2
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6
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1.5k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 21 months ago by ▴ 200 • written 21 months ago by • 0
0
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2
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1.5k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
21 months ago arisarkar88 ▴ 40
0
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1
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801
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 22 months ago by 52k • written 22 months ago by • 0
0
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1
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902
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 23 months ago by 68k • written 23 months ago by • 0
5
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1
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1.9k
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Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 13 months ago by • 0 • written 23 months ago by ▴ 80
0
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4
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1.5k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 23 months ago by 68k • written 23 months ago by • 0
0
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5
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1.8k
views
minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 23 months ago by • 0
0
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1
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875
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 2.2 years ago by ★ 2.0k
0
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3
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3.9k
views
Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 18 months ago by • 0 • written 2.3 years ago by • 0
0
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7
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3.3k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.3 years ago by 68k • written 2.8 years ago by • 0
0
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0
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943
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.9 years ago Jitendra ▴ 10
0
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0
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1.2k
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getsex function error.
QualityControl methylationArrayAnalysis
3.0 years ago zusman • 0
2
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4
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1.6k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.0 years ago Jojo • 0
0
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6
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4.1k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.6 years ago FWNL15 • 0
0
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2
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1.2k
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
3.8 years ago Kesava • 0
1
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8
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1.8k
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EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
3.9 years ago • updated 3.8 years ago chay • 0
0
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2
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1.6k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.9 years ago • updated 3.8 years ago arisarkar88 ▴ 40
0
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2
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1.1k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.0 years ago sissialva21 • 0
2
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7
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3.2k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 16 months ago by • 0 • written 4.2 years ago by ▴ 20
1
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1
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1.4k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
37 results • Page 1 of 1
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Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file by 81becky • 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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