Showing : methylationEPIC • reset
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
6.1 years ago firestar ▴ 20
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
6.1 years ago firestar ▴ 20
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could not find function "champ.load"
ChAMP champ 2.9.10 methylationepic
7.1 years ago david.ch • 0
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differential methylation analysis with RnBeads
rnbeads methylation methylationepic dna methylation
7.2 years ago gabrielrfries • 0
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ChAMP Methylation analysis error code "could not find function champ.load"
champ methylationepic
updated 7.2 years ago by ▴ 290 • written 7.2 years ago by • 0
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Error while using champ.svd() function in subset of data
ChAMP methylationepic epicarray epigenomics
updated 7.6 years ago by ▴ 140 • written 7.6 years ago by ▴ 10
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Error when changing the database for minfi dropLociWithSnps
minfi methylationepic illuminahumanmethylationepicanno.ilmn10b.hg19 SNP
7.8 years ago Ellen O • 0
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Illumina methylationEPIC demo data in IDAT format?
methylation illumina EPIC methylationepic idat
updated 8.0 years ago by ★ 4.1k • written 8.0 years ago by • 0
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minfi "mapToGenome" dimension error
methylation epic microarray minfi methylationepic
8.1 years ago nhejazi • 0
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Shinymethyl 850K Array quality control signal cutoffs
shinymethyl minfi epic microarray methylationepic qualitycontrol
8.2 years ago chelsey.ju • 0
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MINFI missing samples in qcreports and densityplots
minfi illumina methylationEPIC densityplot
8.3 years ago annabelle.congras ▴ 10
11 results • Page 1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file by janwilseo • 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
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DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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