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methylationEPIC
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1.1k
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Beta values and M values cluster differently
methylationEPIC
minfi
microarray
epigenetics
EPIC
5.3 years ago
rmf
▴ 20
0
votes
0
replies
856
views
Best normalisation method
microarray
methylationEPIC
epigenetics
minfi
EPIC
5.3 years ago
rmf
▴ 20
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.3 years ago
david.ch
• 0
0
votes
0
replies
1.1k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
6.4 years ago
gabrielrfries
• 0
0
votes
1
reply
2.0k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
methylationepic
updated 6.4 years ago by
Yuan Tian
▴ 290 • written 6.4 years ago by
csappleby-mallinder1
• 0
3
votes
4
replies
3.1k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.8 years ago by
rcavalca
▴ 140 • written 6.8 years ago by
karthikrpad
▴ 10
0
votes
0
replies
929
views
Error when changing the database for minfi dropLociWithSnps
minfi
methylationepic
illuminahumanmethylationepicanno.ilmn10b.hg19
SNP
7.0 years ago
Ellen O
• 0
0
votes
2
replies
1.9k
views
Illumina methylationEPIC demo data in IDAT format?
methylation
illumina
EPIC
methylationepic
idat
updated 7.1 years ago by
Guido Hooiveld
★ 4.0k • written 7.2 years ago by
Ellen O
• 0
0
votes
4
replies
1.7k
views
minfi "mapToGenome" dimension error
methylation
epic microarray
minfi
methylationepic
7.3 years ago
nhejazi
• 0
0
votes
0
replies
1.0k
views
Shinymethyl 850K Array quality control signal cutoffs
shinymethyl
minfi
epic microarray
methylationepic
qualitycontrol
7.4 years ago
chelsey.ju
• 0
0
votes
3
replies
1.7k
views
MINFI missing samples in qcreports and densityplots
minfi
illumina
methylationEPIC
densityplot
7.5 years ago
annabelle.congras
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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