Showing : methylationArrayAnalysis • reset
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 5 days ago by 68k • written 5 days ago by • 0
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49
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Correlation threshold
MethylationArray methylationArrayAnalysis StatisticalMethod
7 days ago user_bioinfo • 0
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2
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204
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Conumee2 - CNV.summaryplot()
conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest
updated 29 days ago by 68k • written 29 days ago by • 0
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2
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318
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
8 weeks ago a.alkema • 0
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200
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 9 weeks ago by 68k • written 10 weeks ago by • 0
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13
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1.5k
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When doing differential methylation using the sesame package, seems to only go one way
methylation sesame methylationArrayAnalysis
updated 6 months ago by ▴ 20 • written 6 months ago by ▴ 10
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786
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In the sesame package, what does the estimate output mean from testEnrichment()
MethylationArray methylation sesame methylationArrayAnalysis
6 months ago ramiro.barrantes ▴ 10
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456
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
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684
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ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray methylationArrayAnalysis ChAMP
updated 4 months ago by • 0 • written 8 months ago by • 0
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7
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1.8k
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Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
11 months ago hortense96 • 0
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1.4k
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Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 13 months ago by 68k • written 13 months ago by • 0
1
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4
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1.3k
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EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation MethylationArray methylationArrayAnalysis illumina
14 months ago mikat • 0
2
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4
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1.4k
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Correct the batch effect in methylation analysis in R
BatchEffect limma methylationArrayAnalysis
updated 15 months ago by 52k • written 16 months ago by • 0
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6
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1.3k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
16 months ago aldea85 • 0
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1.2k
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EPIC v2 demo data from blood samples
MethylationArray methylationArrayAnalysis
updated 18 months ago by 68k • written 18 months ago by • 0
1
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3
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1.0k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 19 months ago by 68k • written 19 months ago by • 0
0
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1
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3.8k
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Warning messages in detecting P-values
minfiDataEPIC methylationArrayAnalysis
updated 20 months ago by ★ 4.8k • written 20 months ago by ▴ 10
1
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2
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945
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edgeR, RRBS Library size preparation
RRBSdata edgeR methylationArrayAnalysis
21 months ago Krzysztof • 0
1
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2
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1.2k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
22 months ago Irene • 0
1
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1
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873
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
2
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6
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1.6k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
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2
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1.5k
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Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
23 months ago arisarkar88 ▴ 40
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1
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874
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.0 years ago by 52k • written 2.0 years ago by • 0
0
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1
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938
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specifying comparison of interest in the minfi Bumhunter function
limma bumphunter methylationArrayAnalysis minfi
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
5
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1
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2.0k
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Support for new Illumina human methylation EPIC array v2
human methylationArrayAnalysis
updated 14 months ago by • 0 • written 2.1 years ago by ▴ 80
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4
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1.6k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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5
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2.0k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.1 years ago by • 0
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1
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911
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Job: 'Omics data analyst for HPCBio, University of Illinois
SingleCell rnaseq methylationArrayAnalysis Spatial
written 2.3 years ago by ★ 2.0k
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3
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4.1k
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Error: BiocParallel errors 1 remote errors, element index: 1 506 unevaluated and other errors first remote error:
methylationArrayAnalysis
updated 20 months ago by • 0 • written 2.4 years ago by • 0
0
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7
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3.5k
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ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 2.4 years ago by 68k • written 2.9 years ago by • 0
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0
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972
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
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0
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1.2k
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getsex function error.
QualityControl methylationArrayAnalysis
3.2 years ago zusman • 0
2
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4
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1.7k
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How to get methylation data in count data format from "Infinium MethylationEPIC BeadChips (Illumina)" idat files
methylationArrayAnalysis illuminaio beadarray DSS bsseqData
3.2 years ago Jojo • 0
0
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6
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4.3k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
0
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2
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1.2k
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Limma experiment design and making contrasts
limma methylationArrayAnalysis
4.0 years ago Kesava • 0
1
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8
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1.9k
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EPIC array single replicate pipeline?
minfi methylationArrayAnalysis
4.0 years ago chay • 0
0
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2
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1.7k
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champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
4.0 years ago arisarkar88 ▴ 40
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2
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1.1k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
4.2 years ago sissialva21 • 0
2
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7
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3.3k
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Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray methylationArrayAnalysis ChAMP
updated 17 months ago by • 0 • written 4.3 years ago by ▴ 20
1
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1
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1.5k
views
Error in read.metharray(basenames = files, extended = extended, verbose = verbose, : The following specified files do not exist:201172580052_R02C…
ArrayExpress methylationArrayAnalysis
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
40 results • Page 1 of 1
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Comment: Co-occurrence Network Analysis between Algae and Bacteria by solarsunyy • 0
Deploy powerful missiles that generate large-scale explosions, resulting in the [solar smash online][1] formation of substantial craters on…
Comment: Phyloseq: How to add sample table to phyloseq object by chillykean • 0
@[Chill Guy Clicker][1]: You can add sample_table by creating a data frame containing sample information and using sample_data(myobject) <-…
Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Votes
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
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