Showing : methyanalysis • reset
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.1 years ago coobzie • 0
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2
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1.6k
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Methylation data visualization using methyAnalysis with minfi
methylation microarray illumina minfi methyanalysis
updated 6.0 years ago by ★ 1.3k • written 6.0 years ago by • 0
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methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
6.9 years ago mcahn • 0
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Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
7.0 years ago topijush ▴ 10
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Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.1 years ago charleneee95 • 0
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strange results from differential methylation analysis using limma
limma methylation methyanalysis IMA
updated 2.6 years ago by 21k • written 7.8 years ago by • 0
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methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.2 years ago Shicheng Guo • 0
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1.1k
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problem with identifySigDMR command
methyAnalysis
8.4 years ago yuping.zhang • 0
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1.8k
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methyAnalysis error with example data
methyanalysis
8.6 years ago Tom ▴ 10
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10
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4.9k
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Illumina MethylationEPIC vs. 450K
methylumi minfi illuminahumanmethylation450k.db 450k methyanalysis
updated 8.8 years ago by ▴ 740 • written 8.8 years ago by ▴ 50
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2.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.2 years ago jdangelo • 0
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4.5k
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methyAnalysis M values and Beta Values
methyAnalysis methyanalysis 450k
updated 9.8 years ago by ▴ 80 • written 9.8 years ago by ▴ 370
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1.5k
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Understanding methyAnalysis Results
methyAnalysis methyanalysis methylation illuminahumanmethylation450k.db
updated 9.8 years ago by ▴ 80 • written 9.8 years ago by ▴ 370
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
10.8 years ago Allegra Petti ▴ 120
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2.5k
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methyAnalysis for DMR identification
convert methyAnalysis convert methyAnalysis
updated 10.8 years ago by ▴ 160 • written 10.8 years ago by ★ 13k
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6
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3.3k
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DMR identification: minfi speed, memory problems
Annotation convert minfi methyAnalysis bumphunter Annotation convert minfi methyAnalysis
updated 10.8 years ago by 67k • written 10.8 years ago by ★ 13k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.8 years ago Ed Schwalbe ▴ 20
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genoset:::initGenoSet
methyAnalysis methyAnalysis
updated 11.8 years ago by ▴ 440 • written 11.8 years ago by ▴ 20
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1.9k
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Loading Data into MethyAnalysis
Microarray methyAnalysis Microarray methyAnalysis
updated 11.9 years ago by ▴ 440 • written 11.9 years ago by ★ 13k
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methyAnalysis methyGenoSet function
methyAnalysis methyAnalysis
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 10
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1.3k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
12.0 years ago Pan Du ▴ 440
21 results • Page 1 of 1
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Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
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Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
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