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methyanalysis
•
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0
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replies
816
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression
methyAnalysis
MethylationArray
4.5 years ago
coobzie
• 0
1
vote
2
replies
1.7k
views
Methylation data visualization using methyAnalysis with minfi
methylation
microarray
illumina
minfi
methyanalysis
updated 6.4 years ago by
Ou, Jianhong
★ 1.3k • written 6.4 years ago by
Adam_M
• 0
0
votes
0
replies
913
views
methyAnalysis - library(methyAnalysis) hangs when talking to Internet
methyanalysis
7.2 years ago
mcahn
• 0
2
votes
4
replies
3.3k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi
methylumi
methyAnalysis
7.3 years ago
topijush
▴ 10
0
votes
0
replies
1.0k
views
Recurring error in smoothMethygenoset step for MethyAnalysis
methyanalysis
7.4 years ago
charleneee95
• 0
1
vote
9
replies
4.4k
views
strange results from differential methylation analysis using limma
limma
methylation
methyanalysis
IMA
updated 3.0 years ago by
Sean Davis
21k • written 8.1 years ago by
RC
• 0
0
votes
0
replies
1.2k
views
methyAnalysis: heatmapByChromosome not works
methyAnalysis
8.6 years ago
Shicheng Guo
• 0
0
votes
1
reply
1.1k
views
problem with identifySigDMR command
methyAnalysis
8.8 years ago • updated 8.7 years ago
yuping.zhang
• 0
0
votes
0
replies
1.9k
views
methyAnalysis error with example data
methyanalysis
8.9 years ago
Tom
▴ 10
4
votes
10
replies
5.2k
views
Illumina MethylationEPIC vs. 450K
methylumi
minfi
illuminahumanmethylation450k.db
450k
methyanalysis
updated 9.2 years ago by
Peter Hickey
▴ 750 • written 9.2 years ago by
Ahdee
▴ 60
1
vote
13
replies
2.7k
views
MethylAid package visualize function not opening a web browser
illimina 450k methylation
methyanalysis
methylaid
9.6 years ago
jdangelo
• 0
0
votes
1
reply
4.8k
views
methyAnalysis M values and Beta Values
methyAnalysis
methyanalysis
450k
updated 10.2 years ago by
Pan Du
▴ 80 • written 10.2 years ago by
andrew.j.skelton73
▴ 370
1
vote
5
replies
1.6k
views
Understanding methyAnalysis Results
methyAnalysis
methyanalysis
methylation
illuminahumanmethylation450k.db
updated 10.2 years ago by
Pan Du
▴ 80 • written 10.2 years ago by
andrew.j.skelton73
▴ 370
0
votes
0
replies
1.9k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
11.2 years ago
Allegra Petti
▴ 120
0
votes
8
replies
2.7k
views
methyAnalysis for DMR identification
convert
methyAnalysis
convert
methyAnalysis
updated 11.2 years ago by
Giovanni Calice
▴ 160 • written 11.2 years ago by
Guest User
★ 13k
0
votes
6
replies
3.5k
views
DMR identification: minfi speed, memory problems
Annotation
convert
minfi
methyAnalysis
bumphunter
Annotation
convert
minfi
methyAnalysis
updated 11.2 years ago by
James W. MacDonald
68k • written 11.2 years ago by
Guest User
★ 13k
0
votes
0
replies
1.9k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
12.2 years ago
Ed Schwalbe
▴ 20
0
votes
2
replies
1.5k
views
genoset:::initGenoSet
methyAnalysis
methyAnalysis
updated 12.2 years ago by
Pan Du
▴ 440 • written 12.2 years ago by
Schalkwyk, Leonard
▴ 20
0
votes
2
replies
2.0k
views
Loading Data into MethyAnalysis
Microarray
methyAnalysis
Microarray
methyAnalysis
updated 12.3 years ago by
Pan Du
▴ 440 • written 12.3 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
methyAnalysis methyGenoSet function
methyAnalysis
methyAnalysis
updated 12.3 years ago by
Sean Davis
21k • written 12.3 years ago by
Giancarlo
▴ 10
0
votes
0
replies
1.4k
views
importing data problem with methyAnalysis package
Biophysics
Annotation
Preprocessing
annotate
lumi
methyAnalysis
Biophysics
Annotation
lumi
12.3 years ago
Pan Du
▴ 440
21 results • Page
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Comment: Discrepancies in normalised count data vs unnormalised
by
AMgroup
• 0
Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…
Comment: Discrepancies in normalised count data vs unnormalised
by
ATpoint
★ 4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis
by
s.malik
• 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function
by
Vishnu
• 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2
by
Tom
• 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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