Bioconductor Metagene

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metagene metagene2

2.2 years ago sfpacman • 0

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3.4k

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Bioconductor metagene GenomicAlignments

updated 2.6 years ago by lxl13260684135 • 0 • written 3.0 years ago by barrypraveen • 0

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DESeq metagene2 metagene

updated 3.9 years ago by ericfournier2 ▴ 10 • written 3.9 years ago by GM ▴ 10

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metagene metagene$new

updated 7.2 years ago by Charles Joly Beauparlant ▴ 170 • written 7.2 years ago by Wojeff • 0

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1.5k

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metagene R ggplot2

updated 8.0 years ago by Charles Joly Beauparlant ▴ 170 • written 8.0 years ago by JunLVI ▴ 40

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metagene

updated 15 months ago by xlal • 0 • written 8.3 years ago by anton.kratz ▴ 60

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1.3k

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metagene

updated 8.3 years ago by Charles Joly Beauparlant ▴ 170 • written 8.3 years ago by anton.kratz ▴ 60

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1.3k

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metagene

updated 8.3 years ago by Charles Joly Beauparlant ▴ 170 • written 8.3 years ago by anton.kratz ▴ 60

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1.8k

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metagene

8.6 years ago arinaldi ▴ 10

9 results • Page 1 of 1

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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