Bioconductor Metadata

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metadata

3.5 years ago • updated 3.4 years ago Donghui ▴ 10

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rtracklayer Rsamtools GAlignments GRanges metadata

updated 4.5 years ago by Hervé Pagès 16k • written 4.5 years ago by Robert ▴ 10

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deseq2 design metadata

updated 4.9 years ago by sebastian.lobentanzer ▴ 50 • written 4.9 years ago by Assa Yeroslaviz ★ 1.5k

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recount metadata tcga

updated 6.7 years ago by rosabellascottgm • 0 • written 6.7 years ago by Mariela Cortés-López • 0

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1.6k

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variantannotation locatevariants metadata mcols

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by enricoferrero ▴ 660

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granges metadata

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by Ryan C. Thompson ★ 7.9k

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1.4k

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metadata grangeslist granges sample

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by Sim1pall8a • 0

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GRanges metadata subsetting

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by mdeea123 ▴ 10

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granges metadata coursera

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by likeeatingpizza ▴ 10

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genomicfeatures txdb maketxdbfromgff metadata

updated 8.6 years ago by Valerie Obenchain ★ 6.8k • written 8.6 years ago by TimothéeFlutre ▴ 80

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variantannotation vranges readvcf readvcfasvranges metadata

9.8 years ago summerela • 0

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grangeslist metadata

10.0 years ago Robert K. Bradley ▴ 40

12 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Votes

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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