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metadata
•
reset
1
vote
2
replies
1.1k
views
Obtain metadata for software packages in Bioconductor
metadata
3.6 years ago
Donghui
▴ 10
2
votes
2
replies
1.6k
views
How to access metadata of GAlignments objects
rtracklayer
Rsamtools
GAlignments
GRanges
metadata
updated 4.7 years ago by
Hervé Pagès
16k • written 4.7 years ago by
Robert
▴ 10
2
votes
1
reply
1.6k
views
combining columns for experimental design in DESeq2
deseq2
design
metadata
updated 5.1 years ago by
sebastian.lobentanzer
▴ 50 • written 5.1 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.3k
views
Recount2 TCGA metadata missing sample, run and experiment columns
recount
metadata
tcga
updated 6.9 years ago by
rosabellascottgm
• 0 • written 6.9 years ago by
Mariela Cortés-López
• 0
2
votes
2
replies
1.7k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 7.1 years ago by
Valerie Obenchain
★ 6.8k • written 7.1 years ago by
enricoferrero
▴ 680
4
votes
3
replies
5.4k
views
What is the proper way to modify mcols of a GRanges inside a GRangesList?
granges
metadata
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.4k
views
Data structure for my dataset
metadata
grangeslist
granges
sample
updated 7.7 years ago by
Michael Lawrence
★ 11k • written 7.7 years ago by
Sim1pall8a
• 0
1
vote
2
replies
2.3k
views
Subsetting GRanges based on metadata
GRanges
metadata
subsetting
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
mdeea123
▴ 10
3
votes
7
replies
2.2k
views
Group GRanges and keep metadata
granges
metadata
coursera
updated 8.7 years ago by
Michael Lawrence
★ 11k • written 8.7 years ago by
likeeatingpizza
▴ 10
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.7 years ago by
Valerie Obenchain
★ 6.8k • written 8.7 years ago by
TimothéeFlutre
▴ 80
2
votes
3
replies
2.6k
views
Metadata Missing from vcf when reading in with readVcfAsVRanges
variantannotation
vranges
readvcf
readvcfasvranges
metadata
10.0 years ago • updated 9.9 years ago
summerela
• 0
1
vote
3
replies
2.3k
views
Fast way to access metadata for GRangesList?
grangeslist
metadata
10.2 years ago
Robert K. Bradley
▴ 40
12 results • Page
1 of 1
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Replies
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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