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locatevariants
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TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID
TxDB.Hsapiens.UCSC.hg38.knownGene
locateVariants
GenomicFeatures
VariantAnnotation
15 months ago
davidhillis
• 0
0
votes
1
reply
657
views
Information about locateVariants function
genomiclocation
canonicaltranscripts
locateVariants
updated 2.7 years ago by
James W. MacDonald
66k • written 2.7 years ago by
Paola
• 0
2
votes
2
replies
1.5k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 6.5 years ago by
Valerie Obenchain
★ 6.8k • written 6.5 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.2k
views
predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
6.6 years ago
tony j
• 0
0
votes
2
replies
1.6k
views
locateVariants function does not find an annotation for the locus
locatevariants
txdb.hsapiens.ucsc.hg19.knowngene
variantannotation
6.8 years ago
Aleksandra
• 0
0
votes
2
replies
1.4k
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
annotation
locatevariants
variantannotation
updated 7.0 years ago by
Valerie Obenchain
★ 6.8k • written 7.0 years ago by
Lna
• 0
1
vote
23
replies
2.4k
views
Distance calculation for variants in intergenic regions
locatevariants
variantannotation
genomicfeatures
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
Lna
• 0
1
vote
4
replies
2.2k
views
variantAnnotation::locateVariants() with AllVariants(): why do some input variants not get annotated?
variantannotation
locatevariants
8.8 years ago
Jakob Goldmann
• 0
8 results • Page
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Comment: Installing Bioconductor packages in Docker
by
Jon Bråte
▴ 250
How do you run your image after this? I need to specify a password...
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
What is the relationship between side and label?
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
vohara4
• 0
Thank you so much for your response. I've just tried adding Side to the summed object in both of the following manners, but I still get a "…
Comment: Single Cell Experiment : Differential Expression "List of length 0" - Help!
by
ATpoint
★ 4.2k
My guess is that `Side` did not make it into the summed object. You aggregate the SCE to summed with label and SampleName. How would the fu…
Comment: Behaviour of featureCounts when quantifying multi-mapping reads
by
Rachael
• 0
Thank you so much for your help!
Votes
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Comment: Error: no such table: main.gene2pubmed when running makeOrgPackageFromNCBI() fr
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