Bioconductor MetaMS

Showing : metaMS • reset

vote

replies

1.4k

views

XCMS metaMS

updated 4.6 years ago by ron.wehrens ▴ 20 • written 4.6 years ago by julien.kermorvant ▴ 30

votes

replies

893

views

metams

5.5 years ago ryan.high • 0

votes

804

views

metaMS

updated 5.5 years ago by ron.wehrens ▴ 20 • written 5.5 years ago by f.f.vandenberg • 0

vote

replies

2.2k

views

metaMS xcmx CAMERA

updated 8.4 years ago by ron.wehrens ▴ 20 • written 8.4 years ago by lucie.conchou • 0

votes

1.8k

views

metaMS xcms GC-MS metabolomics volatile organic compounds

updated 8.7 years ago by ron.wehrens ▴ 20 • written 8.7 years ago by lucie.conchou • 0

votes

replies

4.0k

views

xcms metaMS MSeasy r

updated 9.3 years ago by peer.karmaus • 0 • written 9.3 years ago by Nemo ▴ 80

6 results • Page 1 of 1

Recent ...

Replies

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

Awards • All