Showing : meta-analysis • reset
0
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3
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686
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Meta-analysis on RNA-seq data sets
meta-analysis sva Combat_Seq RNAseq
6 months ago Travis • 0
0
votes
1
reply
1.3k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 3.6 years ago by 43k • written 3.6 years ago by • 0
0
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11
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4.5k
views
Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 3.6 years ago by • 0 • written 6.4 years ago by ▴ 10
0
votes
7
replies
1.9k
views
Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
4.1 years ago michael.s • 0
3
votes
1
reply
678
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.9 years ago by ★ 28k • written 5.9 years ago by • 0
1
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2
replies
1.1k
views
Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 6.2 years ago by ▴ 110 • written 6.2 years ago by ▴ 90
0
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3
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2.1k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 6.2 years ago by 0 • written 8.7 years ago by ▴ 70
2
votes
1
reply
852
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
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0
replies
988
views
Meta-Analysis chip-seq data
chip-seq meta-analysis
7.8 years ago rezapanahi222 • 0
0
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0
replies
958
views
tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
7.8 years ago rezapanahi222 • 0
2
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4
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1.9k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
7.8 years ago rezapanahi222 • 0
6
votes
4
replies
3.6k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.9 years ago by ▴ 110 • written 8.0 years ago by ▴ 40
3
votes
6
replies
1.6k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 8.1 years ago by ★ 28k • written 8.1 years ago by ▴ 840
0
votes
1
reply
1.3k
views
meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
8.2 years ago hassangiahi • 0
0
votes
1
reply
1.1k
views
Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 8.5 years ago by 43k • written 8.5 years ago by ▴ 20
2
votes
5
replies
3.0k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 8.8 years ago by ▴ 110 • written 9.2 years ago by ▴ 80
3
votes
6
replies
2.6k
views
Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
9.0 years ago Konstantinos Yeles ▴ 80
0
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0
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2.0k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
9.1 years ago alexvpickering ▴ 110
4
votes
4
replies
1.7k
views
Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 9.2 years ago by 52k • written 9.2 years ago by ▴ 10
4
votes
1
reply
2.5k
views
Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 9.3 years ago by ▴ 150 • written 9.7 years ago by ▴ 260
2
votes
4
replies
3.2k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 9.7 years ago by ★ 28k • written 9.7 years ago by ▴ 20
21 results • Page 1 of 1
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Comment: Issue with Soft-Thresholding in WGCNA by dirty.cougar.risi • 0
Interesting data! Looking at these genes, it's like navigating a complex maze. The fluctuating values remind me of chasing high scores in […
Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k
Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…
Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k
You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…
Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k
HTqPCR has been fixed and will be re-instated in 3.21
Votes
what the test method for enrichGO in clusterProfiler?
A: single-cells RNA-seq analysis by MAST with unbalanced group size
Comment: plyranges: find exact GRanges match keeping metadata columns
Answer: Help with the code for "BiocNeighbors::generic_find_knn() function used by scran
Is it possible to speed up VariantAnnotation's rowRanges function when converting to a dataframe?
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