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meta-analysis
•
reset
0
votes
3
replies
479
views
Meta-analysis on RNA-seq data sets
meta-analysis
sva
Combat_Seq
RNAseq
4 months ago
Travis
• 0
0
votes
1
reply
1.2k
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 3.4 years ago by
Michael Love
43k • written 3.4 years ago by
nash12
• 0
0
votes
11
replies
4.4k
views
Remove NaN from a list or replace NaN with a value.
R
meta-analysis
updated 3.5 years ago by
Tanya
• 0 • written 6.2 years ago by
morteza.hadizade
▴ 10
0
votes
7
replies
1.8k
views
Problem using load_raw() function in crossmeta R package
cross
meta-analysis
crossmeta
4.0 years ago • updated 3.9 years ago
michael.s
• 0
3
votes
1
reply
636
views
Meta-Analysis: Start with counts?
meta-analysis
updated 5.7 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
kerr
• 0
1
vote
2
replies
1.0k
views
Meta-analysis of RNAseq data
RNAseq
meta-analysis
microarray
public data sets
updated 6.0 years ago by
alexvpickering
▴ 110 • written 6.0 years ago by
Vladimir Krasikov
▴ 90
0
votes
3
replies
2.1k
views
Algorithm for between and within microarray normalisation (for meta-analysis).
microarray
meta-analysis
gene expression
updated 6.1 years ago by
Bioconductor Community
0 • written 8.5 years ago by
StephK
▴ 70
2
votes
1
reply
834
views
how do meta-analysis with Na p-value of DESeq2 ?
deseq2
meta-analysis
metaseq
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
ed_isfahani
• 0
0
votes
0
replies
964
views
Meta-Analysis chip-seq data
chip-seq
meta-analysis
7.6 years ago
rezapanahi222
• 0
0
votes
0
replies
931
views
tools or package for meta-analysis of chip-seq result
chipseq
meta-analysis
7.7 years ago
rezapanahi222
• 0
2
votes
4
replies
1.9k
views
R package for Meta-Analysis of CHIP-Seq data
chipseq
meta-analysis
ubuntu
7.7 years ago
rezapanahi222
• 0
6
votes
4
replies
3.5k
views
Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.8 years ago by
alexvpickering
▴ 110 • written 7.8 years ago by
giroudpaul
▴ 40
3
votes
6
replies
1.5k
views
Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray
rnaseq
DEgenes
meta-analysis
limma
updated 8.0 years ago by
Aaron Lun
★ 28k • written 8.0 years ago by
svlachavas
▴ 840
0
votes
1
reply
1.3k
views
meta analysis of p value data by metaseq package
rnaseq
meta-analysis
p values
8.1 years ago
hassangiahi
• 0
0
votes
1
reply
1.1k
views
Meta-analysis on rna-seq data without replicates
meta-analysis
rnaseq
metarnaseq
updated 8.3 years ago by
Michael Love
43k • written 8.3 years ago by
bioinformatics
▴ 20
2
votes
5
replies
2.9k
views
Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray
meta-analysis
cross-platform normalization
statistical inference
updated 8.6 years ago by
alexvpickering
▴ 110 • written 9.0 years ago by
Konstantinos Yeles
▴ 80
3
votes
6
replies
2.4k
views
Comparison of DE lists from different datasets of same microarray platform
microarray
DE-comparison
meta-analysis
scatter-plot
limma
8.9 years ago
Konstantinos Yeles
▴ 80
0
votes
0
replies
1.9k
views
MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE
meta-analysis
8.9 years ago
alexvpickering
▴ 110
4
votes
4
replies
1.6k
views
Comparing DE probes from same-platform microarrays
limma
microarray
meta-analysis
updated 9.1 years ago by
Gordon Smyth
52k • written 9.1 years ago by
clevy
▴ 10
4
votes
1
reply
2.5k
views
Meta-analysis of gene expression data by 'MetaDE'
r
meta-analysis
MetaDE
updated 9.1 years ago by
Cherif Ben Hamda
▴ 150 • written 9.5 years ago by
Agaz Hussain Wani
▴ 260
2
votes
4
replies
3.1k
views
Meta-Analysis after running limma on a normalized dataset
meta-analysis
limma
toptable
updated 9.5 years ago by
Aaron Lun
★ 28k • written 9.5 years ago by
Vani
▴ 20
21 results • Page
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Comment: input for singR function
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• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
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• 0
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by
James W. MacDonald
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Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
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43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
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by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Votes
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Answer: Selection of correct coefficients or contrasts in DESeq2
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