Showing : meta-analysis • reset
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Meta-analysis on RNA-seq data sets
meta-analysis sva Combat_Seq RNAseq
3 months ago Travis • 0
0
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1
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1.2k
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What does one-sided p-value in DESeq2 mean in biological terms?
one-sided nbinomWaldTest p-value meta-analysis DESeq2
updated 3.3 years ago by 43k • written 3.3 years ago by • 0
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11
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4.3k
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Remove NaN from a list or replace NaN with a value.
R meta-analysis
updated 3.4 years ago by • 0 • written 6.1 years ago by ▴ 10
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7
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1.8k
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Problem using load_raw() function in crossmeta R package
cross meta-analysis crossmeta
3.9 years ago michael.s • 0
3
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1
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630
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Meta-Analysis: Start with counts?
meta-analysis
updated 5.6 years ago by ★ 28k • written 5.6 years ago by • 0
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2
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1.0k
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Meta-analysis of RNAseq data
RNAseq meta-analysis microarray public data sets
updated 5.9 years ago by ▴ 110 • written 5.9 years ago by ▴ 90
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3
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2.0k
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Algorithm for between and within microarray normalisation (for meta-analysis).
microarray meta-analysis gene expression
updated 6.0 years ago by 0 • written 8.4 years ago by ▴ 70
2
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1
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826
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how do meta-analysis with Na p-value of DESeq2 ?
deseq2 meta-analysis metaseq
updated 7.5 years ago by 43k • written 7.5 years ago by • 0
0
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0
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955
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Meta-Analysis chip-seq data
chip-seq meta-analysis
7.6 years ago rezapanahi222 • 0
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919
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tools or package for meta-analysis of chip-seq result
chipseq meta-analysis
7.6 years ago rezapanahi222 • 0
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4
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1.8k
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R package for Meta-Analysis of CHIP-Seq data
chipseq meta-analysis ubuntu
7.6 years ago rezapanahi222 • 0
6
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4
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3.4k
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Meta-analysis of microarrays (and RNA-seq) data
meta-analysis
updated 7.7 years ago by ▴ 110 • written 7.7 years ago by ▴ 40
3
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6
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1.5k
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Possible approach of compare/interpret RNA-Seq results with microarray gene expression describing the same phenotype
microarray rnaseq DEgenes meta-analysis limma
updated 7.9 years ago by ★ 28k • written 7.9 years ago by ▴ 840
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1
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1.2k
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meta analysis of p value data by metaseq package
rnaseq meta-analysis p values
8.0 years ago hassangiahi • 0
0
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1
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1.1k
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Meta-analysis on rna-seq data without replicates
meta-analysis rnaseq metarnaseq
updated 8.2 years ago by 43k • written 8.2 years ago by ▴ 20
2
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5
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2.9k
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Question on how to proceed and analyze 9 microarray datasets of two different platforms to perform meta-analysis
microarray meta-analysis cross-platform normalization statistical inference
updated 8.5 years ago by ▴ 110 • written 8.9 years ago by ▴ 80
3
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6
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2.4k
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Comparison of DE lists from different datasets of same microarray platform
microarray DE-comparison meta-analysis scatter-plot limma
8.8 years ago Konstantinos Yeles ▴ 80
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0
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1.9k
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MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
MetaDE meta-analysis
8.8 years ago alexvpickering ▴ 110
4
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4
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1.6k
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Comparing DE probes from same-platform microarrays
limma microarray meta-analysis
updated 9.0 years ago by 52k • written 9.0 years ago by ▴ 10
4
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1
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2.5k
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Meta-analysis of gene expression data by 'MetaDE'
r meta-analysis MetaDE
updated 9.0 years ago by ▴ 150 • written 9.4 years ago by ▴ 260
2
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4
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3.1k
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Meta-Analysis after running limma on a normalized dataset
meta-analysis limma toptable
updated 9.5 years ago by ★ 28k • written 9.5 years ago by ▴ 20
21 results • Page 1 of 1
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Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0
After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```
Answer: DESeq error: counts matrix should be numeric, currently it has mode: character by ATpoint ★ 4.6k
R thinks your data are characters (e.g. "1", "2", instead of 1, 2) so given that your `counts_data` indeed only contains counts, do: `mo…
Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0
Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…
Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0
EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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