Showing : matchprobes • reset
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gcrma background correction-saving output
cdf affy gcrma matchprobes affyio cdf affy gcrma matchprobes affyio
updated 6.1 years ago by 0 • written 18.2 years ago by ★ 2.2k
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940
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A circular problem: re-annotation of custom PM only probes
cdf matchprobes cdf matchprobes
updated 13.6 years ago by ★ 7.2k • written 13.6 years ago by ▴ 80
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Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.7 years ago chawla ▴ 190
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alternative to matchprobes
matchprobes Biostrings matchprobes Biostrings
updated 13.7 years ago by 16k • written 13.8 years ago by ▴ 10
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Query regarding matchprobes package
matchprobes matchprobes
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 220
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Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
14.4 years ago James W. MacDonald 68k
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757
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how to compare 3 different array platforms by matchprobes?
Sequencing probe matchprobes Sequencing probe matchprobes
updated 15.2 years ago by ★ 13k • written 15.2 years ago by ▴ 10
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3
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1.2k
views
gcrma using deprecated package
probe matchprobes AnnotationDbi probe matchprobes AnnotationDbi
15.5 years ago Rullmann, J.A.C. Ton ▴ 40
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justGCRMA problem :(
GO Cancer gcrma matchprobes PROcess affyio GO Cancer gcrma matchprobes PROcess affyio
updated 15.9 years ago by ▴ 20 • written 16.0 years ago by 25k
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affyPLM QC vignette is missing...
probe Biobase affy gcrma matchprobes affyPLM probe Biobase affy gcrma matchprobes
16.0 years ago Jenny Drnevich ★ 2.0k
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justGCRMA problem :(
GO gcrma matchprobes PROcess affyio GO gcrma matchprobes PROcess affyio
16.0 years ago Jacek Nowak ▴ 20
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fail combineAffyBatch for many files
cdf matchprobes cdf matchprobes
updated 16.0 years ago by ★ 13k • written 16.1 years ago by ▴ 30
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2
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installing problem - preprocessCore, affy on linux platform
Biobase genefilter affy vsn gcrma matchprobes preprocessCore Biobase genefilter affy vsn
updated 16.4 years ago by ★ 6.5k • written 16.4 years ago by ▴ 20
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2
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probe file for custom array
Microarray Cancer cdf probe gcrma matchprobes Microarray Cancer cdf probe gcrma
updated 17.0 years ago by ★ 1.3k • written 17.0 years ago by 68k
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code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
17.4 years ago Richard Friedman ★ 2.0k
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problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 17.4 years ago by ▴ 500 • written 17.4 years ago by ▴ 510
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affTableAnn error
hgu133a2 moe430a mouse430a2 cdf limma matchprobes hgu133a2 moe430a mouse430a2 cdf limma
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 2.0k
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7
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2.0k
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problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ★ 2.2k
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2
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1.5k
views
How to get probeset ID
rae230a cdf affy gcrma matchprobes rae230a cdf affy gcrma matchprobes
updated 17.5 years ago by 68k • written 17.5 years ago by ▴ 310
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Return of "I'm sorry, I do not know about chip type (foo)"
Survival cdf affydata limma gcrma matchprobes affyPLM simpleaffy Survival cdf affydata
17.6 years ago Dave Jacoby ▴ 20
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9
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2.1k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 90
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combineAffyBatch
hgu133a Biobase matchprobes hgu133a Biobase matchprobes
updated 17.6 years ago by 25k • written 17.6 years ago by ▴ 140
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Fwd: limma gene symbol not avialable problem
Microarray Annotation Cancer cdf probe annotate affy affydata limma matchprobes affyio
17.7 years ago lidaof ▴ 450
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6
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2.1k
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ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 17.7 years ago by ▴ 20 • written 17.7 years ago by ▴ 200
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matching affy ids from hgu95 to hgu133 (or any other combination)
hgu133a matchprobes convert hgu133a matchprobes convert
updated 17.7 years ago by ★ 1.1k • written 17.7 years ago by ▴ 510
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topTable "resort.by" broken...
GO Survival Biobase annotate genefilter affy affydata graph gcrma matchprobes annaffy
updated 17.9 years ago by 52k • written 17.9 years ago by ★ 2.2k
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8
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views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 18.0 years ago by ★ 7.4k • written 18.0 years ago by ★ 2.2k
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annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.0 years ago by 68k • written 18.0 years ago by ▴ 320
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11
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3.0k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 18.2 years ago by ▴ 10 • written 18.2 years ago by ★ 2.2k
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3
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ExpressionSet, fitPLM confusion
cdf probe gcrma matchprobes affyPLM affyio cdf probe gcrma matchprobes affyPLM affyio
updated 18.2 years ago by ★ 13k • written 18.2 years ago by ▴ 510
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4
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gcrma background correction
cdf gcrma matchprobes cdf gcrma matchprobes
updated 18.2 years ago by ★ 6.5k • written 18.2 years ago by ▴ 170
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2
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2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 18.2 years ago by 52k • written 18.2 years ago by ▴ 60
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Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 360
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warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.3 years ago by 68k • written 18.3 years ago by ★ 2.2k
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3
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matchrpobes and HGU95A mismatch
hgu95a matchprobes hgu95a matchprobes
updated 18.3 years ago by ▴ 450 • written 18.3 years ago by ▴ 20
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2
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"normalize.quantiles.robust" produces the SAME intensities from different weights?!
Normalization affydata gcrma matchprobes affyPLM affyio Normalization affydata gcrma
updated 18.4 years ago by ★ 1.2k • written 18.4 years ago by ▴ 420
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method for removing consistent technical bias?
affy affydata vsn limma gcrma matchprobes affyPLM affyio affy affydata vsn limma gcrma
18.4 years ago k. brand ▴ 420
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2
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normalize.quantiles.robust: how to implement weights for different arrays?
cdf gcrma matchprobes affyPLM affyio cdf gcrma matchprobes affyPLM affyio
updated 18.4 years ago by ★ 6.5k • written 18.4 years ago by ▴ 420
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4 replicates, of 3 tissues- one good hyb (2xreps), one bad hyb (2xreps). Best way forward?
qPCR affy affydata vsn limma gcrma matchprobes affyPLM affyio BRAIN qPCR affy affydata
18.4 years ago k. brand ▴ 420
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1.4k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
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2
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734
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combineAffyBatch problem
cdf affy matchprobes cdf affy matchprobes
updated 18.5 years ago by ★ 13k • written 18.5 years ago by ▴ 10
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0
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combined Affybatch and mas5
hgu133a cdf affy matchprobes hgu133a cdf affy matchprobes
18.7 years ago Lewin Eisele ▴ 10
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2
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1.5k
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Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy gcrma matchprobes affyPLM affyio affy gcrma matchprobes affyPLM affyio
updated 18.7 years ago by ▴ 50 • written 18.7 years ago by ▴ 20
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8
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2.2k
views
error message in gcrma
cdf affy gcrma matchprobes plier cdf affy gcrma matchprobes plier
updated 18.7 years ago by ★ 7.4k • written 18.7 years ago by ▴ 520
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0
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justGCRMA error in BioC 1.8
Microarray cdf affy gcrma matchprobes Microarray cdf affy gcrma matchprobes
18.7 years ago James W. MacDonald 68k
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4
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2.1k
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Failure to load Biobase
Biobase affy limma gcrma matchprobes affyio Biobase affy limma gcrma matchprobes affyio
updated 18.7 years ago by 25k • written 18.7 years ago by ★ 2.2k
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0
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justGCRMA error in BioC 1.8
cdf affy gcrma matchprobes cdf affy gcrma matchprobes
18.8 years ago echang4@life.uiuc.edu ▴ 110
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2
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1.4k
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AnnBuilder problem for mu11ksuba
Organism mu11ksuba annotate limma gcrma matchprobes annaffy AnnBuilder Organism mu11ksuba
updated 18.9 years ago by ▴ 780 • written 18.9 years ago by ★ 1.4k
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0
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Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5
Normalization cdf affy matchprobes Normalization cdf affy matchprobes
18.9 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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0
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843
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Error with CDF environment when using combineAffyBatch of package matchprobes
Microarray Cancer cdf matchprobes Microarray Cancer cdf matchprobes
18.9 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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