Bioconductor Maplot

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1.4k

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DESeq2 MAplot

updated 22 months ago by ATpoint ★ 4.6k • written 22 months ago by Michael • 0

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2.8k

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MAplot

22 months ago Nathalie ▴ 20

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3.1k

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DESeq2 MAplot deseq

updated 3.8 years ago by Michael Love 43k • written 3.8 years ago by sp • 0

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950

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deseq2 MAplot lfcshrink

updated 4.3 years ago by Michael Love 43k • written 4.3 years ago by evelas13 • 0

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734

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deseq2 maplot annotation

updated 5.1 years ago by Michael Love 43k • written 5.1 years ago by rbronste ▴ 60

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3.1k

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diffbind R MAplot Chipseq

updated 5.5 years ago by Rory Stark ★ 5.2k • written 5.5 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.0 years ago avitalwasser • 0

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1.4k

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deseq2 maplot

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by phurbusang • 0

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2.3k

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deseq2 maplot subset

updated 6.9 years ago by Michael Love 43k • written 6.9 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 6.9 years ago by Rory Stark ★ 5.2k • written 6.9 years ago by grundelphine • 0

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1.4k

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diffbind deseq2 maplot

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.3 years ago by Gordon Smyth 52k • written 8.3 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.7 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…

Answer: Feature Counts -R XS Read Assignment Tag by Gordon Smyth 52k

No, featureCounts cannot change the XS tag to a different tag, because that would change the information in the output. featureCounts needs…

Comment: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Thanks! This one might be worth remaking with `ComplexHeatmap`. Similar to https://github.com/LieberInstitute/spatialLIBD/pull/91 that was …

Votes

Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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