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maplot
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0
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2
replies
1.1k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 16 months ago by
ATpoint
★ 4.2k • written 16 months ago by
Michael
• 0
10
votes
8
replies
2.3k
views
MA plot
MAplot
17 months ago
Nathalie
▴ 20
0
votes
3
replies
2.5k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 3.3 years ago by
Michael Love
42k • written 3.3 years ago by
sp
• 0
1
vote
1
reply
817
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 3.8 years ago by
Michael Love
42k • written 3.8 years ago by
evelas13
• 0
1
vote
2
replies
621
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
rbronste
▴ 60
2
votes
2
replies
2.7k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.1 years ago by
Rory Stark
★ 5.2k • written 5.1 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.4k
views
MA plot scattering pattern
deseq2
MAplot
5.6 years ago
avitalwasser
• 0
5
votes
8
replies
1.3k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 5.6 years ago by
James W. MacDonald
66k • written 5.6 years ago by
rbronste
▴ 60
0
votes
4
replies
1.1k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 5.7 years ago by
Michael Love
42k • written 5.7 years ago by
ma619
• 0
0
votes
1
reply
1.6k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 6.4 years ago by
Michael Love
42k • written 6.4 years ago by
phurbusang
• 0
2
votes
1
reply
2.1k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 6.5 years ago by
Michael Love
42k • written 6.5 years ago by
rbronste
▴ 60
2
votes
4
replies
1.7k
views
DiffBind MA plot
diffbind
maplot
updated 6.5 years ago by
Rory Stark
★ 5.2k • written 6.5 years ago by
grundelphine
• 0
1
vote
2
replies
1.3k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 6.8 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
rbronste
▴ 60
0
votes
3
replies
2.7k
views
DESeq2 MA plot look different
deseq2
maplot
updated 6.8 years ago by
Michael Love
42k • written 6.8 years ago by
jshouse
▴ 10
3
votes
6
replies
1.9k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 7.9 years ago by
Gordon Smyth
51k • written 7.9 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.3k
views
error while running MAplot
MAplot
rnaseq
cummerbund
8.2 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
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Replies
Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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