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maplot
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1.6k
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Why is my log fold change not centered around 0 and lower?
DESeq2
MAplot
updated 2.2 years ago by
ATpoint
★ 4.8k • written 2.2 years ago by
Michael
• 0
10
votes
8
replies
3.1k
views
MA plot
MAplot
2.2 years ago
Nathalie
▴ 20
0
votes
3
replies
3.6k
views
Understanding MA plot distortion
DESeq2
MAplot
deseq
updated 4.1 years ago by
Michael Love
43k • written 4.1 years ago by
sp
• 0
1
vote
1
reply
1.0k
views
LFCshrink function understanding
deseq2
MAplot
lfcshrink
updated 4.7 years ago by
Michael Love
43k • written 4.7 years ago by
evelas13
• 0
1
vote
2
replies
805
views
Label points on DESeq2 MA plot with interval list
deseq2
maplot
annotation
updated 5.4 years ago by
Michael Love
43k • written 5.4 years ago by
rbronste
▴ 60
2
votes
2
replies
3.4k
views
DiffBind's MA plots for ChIP-seq - how to properly interpret normalization from them?
diffbind
R
MAplot
Chipseq
updated 5.9 years ago by
Rory Stark
★ 5.2k • written 5.9 years ago by
melnuesch
▴ 10
0
votes
2
replies
1.7k
views
MA plot scattering pattern
deseq2
MAplot
6.4 years ago
avitalwasser
• 0
5
votes
8
replies
1.5k
views
High normalized counts on DESeq2 MAplot
deseq2
maplot
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
rbronste
▴ 60
0
votes
4
replies
1.4k
views
DESeq2 MA plot normalisation Issue
deseq2
normalization
maplot
rnaseq
updated 6.5 years ago by
Michael Love
43k • written 6.5 years ago by
ma619
• 0
0
votes
1
reply
1.8k
views
MA plot interpretation .
MAPLOT
DESEQ2
RNASEQ
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
phurbusang
• 0
2
votes
1
reply
2.6k
views
Error in DESeq2 plotMA from object subset
deseq2
maplot
subset
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
rbronste
▴ 60
2
votes
4
replies
2.1k
views
DiffBind MA plot
diffbind
maplot
updated 7.3 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
grundelphine
• 0
1
vote
2
replies
1.6k
views
DiffBind DESeq2 MA plot skewed
diffbind
deseq2
maplot
updated 7.6 years ago by
Rory Stark
★ 5.2k • written 7.6 years ago by
rbronste
▴ 60
0
votes
3
replies
3.0k
views
DESeq2 MA plot look different
deseq2
maplot
updated 7.6 years ago by
Michael Love
43k • written 7.6 years ago by
jshouse
▴ 10
3
votes
6
replies
2.3k
views
Clarification MAplot and FDR in EdgeR
edgeR
MAplot
rnaseq
differential gene expression
updated 8.7 years ago by
Gordon Smyth
52k • written 8.7 years ago by
joseph.bergenstrahle
• 0
0
votes
0
replies
1.4k
views
error while running MAplot
MAplot
rnaseq
cummerbund
9.0 years ago
kritikamish99
▴ 10
16 results • Page
1 of 1
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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