Bioconductor Maplot

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DESeq2 MAplot

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Michael • 0

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2.9k

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MAplot

24 months ago Nathalie ▴ 20

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3.2k

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DESeq2 MAplot deseq

updated 3.9 years ago by Michael Love 43k • written 3.9 years ago by sp • 0

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967

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deseq2 MAplot lfcshrink

updated 4.4 years ago by Michael Love 43k • written 4.4 years ago by evelas13 • 0

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754

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deseq2 maplot annotation

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by rbronste ▴ 60

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3.2k

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diffbind R MAplot Chipseq

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.2 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by rbronste ▴ 60

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1.9k

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diffbind maplot

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.0 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.3 years ago by Rory Stark ★ 5.2k • written 7.3 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.3 years ago by Michael Love 43k • written 7.3 years ago by jshouse ▴ 10

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2.1k

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edgeR MAplot rnaseq differential gene expression

updated 8.4 years ago by Gordon Smyth 52k • written 8.4 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.8 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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