Bioconductor Maplot

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1.6k

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DESeq2 MAplot

updated 2.0 years ago by ATpoint ★ 4.7k • written 2.0 years ago by Michael • 0

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2.9k

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MAplot

2.1 years ago Nathalie ▴ 20

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3.3k

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DESeq2 MAplot deseq

updated 4.0 years ago by Michael Love 43k • written 4.0 years ago by sp • 0

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990

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deseq2 MAplot lfcshrink

updated 4.5 years ago by Michael Love 43k • written 4.5 years ago by evelas13 • 0

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770

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deseq2 maplot annotation

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by rbronste ▴ 60

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3.2k

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diffbind R MAplot Chipseq

updated 5.7 years ago by Rory Stark ★ 5.2k • written 5.7 years ago by melnuesch ▴ 10

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1.6k

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deseq2 MAplot

6.2 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by ma619 • 0

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1.7k

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MAPLOT DESEQ2 RNASEQ

updated 7.0 years ago by Michael Love 43k • written 7.0 years ago by phurbusang • 0

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2.4k

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deseq2 maplot subset

updated 7.1 years ago by Michael Love 43k • written 7.1 years ago by rbronste ▴ 60

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2.0k

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diffbind maplot

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.4 years ago by Rory Stark ★ 5.2k • written 7.4 years ago by rbronste ▴ 60

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2.9k

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deseq2 maplot

updated 7.4 years ago by Michael Love 43k • written 7.4 years ago by jshouse ▴ 10

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2.2k

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edgeR MAplot rnaseq differential gene expression

updated 8.5 years ago by Gordon Smyth 52k • written 8.5 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

8.9 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Comment: normalizatino of dna methylation EPIC data by user_bioinfo • 0

yes actually that's why I did, and its all good! thank you for your response

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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