Bioconductor Maplot

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1.6k

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DESeq2 MAplot

updated 2.1 years ago by ATpoint ★ 4.8k • written 2.1 years ago by Michael • 0

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3.1k

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MAplot

2.2 years ago Nathalie ▴ 20

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3.5k

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DESeq2 MAplot deseq

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by sp • 0

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1.0k

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deseq2 MAplot lfcshrink

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by evelas13 • 0

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797

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deseq2 maplot annotation

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by rbronste ▴ 60

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3.3k

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diffbind R MAplot Chipseq

updated 5.9 years ago by Rory Stark ★ 5.2k • written 5.9 years ago by melnuesch ▴ 10

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1.7k

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deseq2 MAplot

6.4 years ago avitalwasser • 0

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1.5k

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deseq2 maplot

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by rbronste ▴ 60

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1.3k

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deseq2 normalization maplot rnaseq

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by ma619 • 0

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1.8k

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MAPLOT DESEQ2 RNASEQ

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by phurbusang • 0

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2.5k

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deseq2 maplot subset

updated 7.2 years ago by Michael Love 43k • written 7.2 years ago by rbronste ▴ 60

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2.0k

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diffbind maplot

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by grundelphine • 0

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1.5k

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diffbind deseq2 maplot

updated 7.5 years ago by Rory Stark ★ 5.2k • written 7.5 years ago by rbronste ▴ 60

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3.0k

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deseq2 maplot

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by jshouse ▴ 10

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2.3k

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edgeR MAplot rnaseq differential gene expression

updated 8.6 years ago by Gordon Smyth 52k • written 8.6 years ago by joseph.bergenstrahle • 0

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1.4k

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MAplot rnaseq cummerbund

9.0 years ago kritikamish99 ▴ 10

16 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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