Bioconductor Makecontrasts

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designmatrices differentialexpression makeContrasts limma model.matrix

2.6 years ago mohammedtoufiq91 ▴ 10

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makeContrasts edgeR

updated 3.3 years ago by Steve Lianoglou ★ 13k • written 3.3 years ago by HS ▴ 10

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microarray dge matrix makecontrasts limma

updated 4.4 years ago by Gordon Smyth 51k • written 4.4 years ago by June. ▴ 10

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diffrential expression limma makeContrasts

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by S.Bamopoulos ▴ 10

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rnaseq edgeR makecontrasts interactions

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by David R ▴ 90

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limma model.matrix makecontrasts

updated 6.4 years ago by Gordon Smyth 51k • written 6.4 years ago by enricoferrero ▴ 660

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846

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deseq2 makecontrasts

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by samuel.quentin • 0

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contrast matrix toptable makecontrasts differential gene expression

7.2 years ago • updated 7.1 years ago stinehedensted • 0

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limma contrast missing data lmfit makecontrasts

updated 7.2 years ago by Gordon Smyth 51k • written 7.3 years ago by wewolski ▴ 10

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limma toptable makecontrasts contrast matrix

updated 7.4 years ago by Ryan C. Thompson ★ 7.9k • written 7.4 years ago by hoe • 0

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rnaseq edger makecontrasts

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by wangzhang1988 • 0

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limma model.matrix makecontrasts

7.7 years ago TFony ▴ 10

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limma design matrix makecontrasts multiple comparisons

7.8 years ago annabelle.congras ▴ 10

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edger makecontrasts timecourse

updated 8.0 years ago by Ryan C. Thompson ★ 7.9k • written 8.0 years ago by aec ▴ 90

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edger makecontrasts

8.5 years ago xiaoaozqd • 0

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limma microarray interaction model multiple factor design makeContrasts

updated 8.7 years ago by Aaron Lun ★ 28k • written 8.7 years ago by svlachavas ▴ 830

16 results • Page 1 of 1

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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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