Showing : makecontrasts • reset
3
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4
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1.8k
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How to make design matrices or compare contrast in limma
designmatrices differentialexpression makeContrasts limma model.matrix
3.1 years ago • updated 3.0 years ago mohammedtoufiq91 ▴ 10
1
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5
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1.5k
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makeContrasts question
makeContrasts edgeR
updated 3.7 years ago by ★ 13k • written 3.7 years ago by ▴ 10
1
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2
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1.1k
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How to construct matrix and fit linear model for this microarray?
microarray dge matrix makecontrasts limma
updated 4.8 years ago by 52k • written 4.8 years ago by ▴ 10
2
votes
2
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2.6k
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makeContrasts for comparing multiple levels of a factor variable to the reference level
diffrential expression limma makeContrasts
updated 6.8 years ago by 52k • written 6.8 years ago by ▴ 10
0
votes
2
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1.2k
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Circumventing statistical non-significance on a triple interaction using edgeR
rnaseq edgeR makecontrasts interactions
updated 6.8 years ago by ★ 28k • written 6.8 years ago by ▴ 90
9
votes
3
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6.1k
views
[limma] Define contrasts for model with covariates
limma model.matrix makecontrasts
updated 6.8 years ago by 52k • written 6.9 years ago by ▴ 680
0
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1
reply
905
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DESeq2 : how to make model contrast with multifactors : cond1(env1 versus env2) versus cond2(env1 versus env2) ?
deseq2 makecontrasts
updated 7.4 years ago by 43k • written 7.4 years ago by • 0
3
votes
6
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2.7k
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Help to understand my contrast.matrix and to interpret my topTable results
contrast matrix toptable makecontrasts differential gene expression
7.6 years ago stinehedensted • 0
2
votes
5
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2.8k
views
Why does limma contrast.fit produces NA's for all contrast although missing data only in one condition?
limma contrast missing data lmfit makecontrasts
updated 7.7 years ago by 52k • written 7.7 years ago by ▴ 10
1
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2
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1.6k
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differentially expressed genes without contrasts
limma toptable makecontrasts contrast matrix
updated 7.8 years ago by ★ 7.9k • written 7.8 years ago by • 0
0
votes
4
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2.0k
views
setting contrast in edgeR for time series data
rnaseq edger makecontrasts
updated 7.9 years ago by ★ 28k • written 7.9 years ago by • 0
2
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3
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1.5k
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Issues about experiment design
limma model.matrix makecontrasts
8.2 years ago TFony ▴ 10
3
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4
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5.9k
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multiple comparison using limma
limma design matrix makecontrasts multiple comparisons
8.2 years ago annabelle.congras ▴ 10
1
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6
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1.8k
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edgeR time series DMSO correction
edger makecontrasts timecourse
updated 8.5 years ago by ★ 7.9k • written 8.5 years ago by ▴ 90
0
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7
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1.7k
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why two different makeContrasts have the same results?
edger makecontrasts
8.9 years ago xiaoaozqd • 0
8
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12
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4.7k
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Interaction models in limma and multiple factor assessement regarding microarray statistical inference
limma microarray interaction model multiple factor design makeContrasts
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ▴ 840
16 results • Page 1 of 1
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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2 by Tom • 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k
This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…
Comment: Filtering after DESeq by caroline.zanchi • 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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