Showing : makecdfenv • reset
2
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240
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 11 weeks ago by 68k • written 11 weeks ago by • 0
0
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3
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1.9k
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unable to install GenomeWideSNP_6 cdf
makecdfenv bioclite
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
2
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8
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4.7k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
8.4 years ago jayme.rickman • 0
2
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4
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1.7k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 9.8 years ago by 68k • written 9.8 years ago by ▴ 10
0
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4
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1.8k
views
error with makecdfenv package
Annotation cdf makecdfenv oligo xps Annotation cdf makecdfenv oligo xps
updated 10.6 years ago by ★ 3.9k • written 10.6 years ago by 68k
0
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1
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1.9k
views
Reading MAGE-ML cdf into bioconductor for limma in R v. 3.0.2
Microarray cdf probe makecdfenv RMAGEML ArrayExpress Microarray cdf probe makecdfenv
updated 10.9 years ago by 68k • written 10.9 years ago by ★ 13k
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2.0k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Annotation cdf makecdfenv miRNA Annotation cdf makecdfenv
11.0 years ago Isaac Neuhaus ▴ 360
0
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0
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1.7k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA cdf affy makecdfenv affxparser miRNA cdf affy makecdfenv affxparser
11.1 years ago James W. MacDonald 68k
1
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4
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3.2k
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Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package
miRNA Microarray cdf makecdfenv miRNA Microarray cdf makecdfenv
updated 11.1 years ago by 68k • written 11.1 years ago by ★ 13k
0
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3
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1.5k
views
R crashes when using CDF package generated using makecdfenv
cdf makecdfenv cdf makecdfenv
updated 12.0 years ago by ★ 6.5k • written 12.0 years ago by ★ 13k
0
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2
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1.3k
views
Error message (probably) from AffyBatch.R when using a modified CDF
cdf affy makecdfenv cdf affy makecdfenv
updated 12.0 years ago by 68k • written 12.0 years ago by ▴ 50
0
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2
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1.3k
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affy : ReadAffy() fails on HuGene-1_1-st-v1 chips
Microarray cdf affy makecdfenv PROcess oligo cycle Microarray cdf affy makecdfenv oligo
updated 13.0 years ago by 68k • written 13.0 years ago by ▴ 630
0
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0
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1.4k
views
How to make a custom cdf file?
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
13.1 years ago Olivier Lucas ▴ 40
0
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0
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1.0k
views
a question about getCdfInfo package in GCRMA, thanks for your help.
Annotation cdf makecdfenv Annotation cdf makecdfenv
13.3 years ago boczniak767 ▴ 740
0
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0
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1.3k
views
[R] make.cdf.package: Error: cannot allocate vector of size 1 Kb
Cancer cdf affy makecdfenv Cancer cdf affy makecdfenv
15.1 years ago James W. MacDonald 68k
0
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1
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1.2k
views
problem in make.cdf.package of MoGene-1_0-st-v1.r3.CDF
cdf makecdfenv cdf makecdfenv
updated 15.4 years ago by ★ 4.3k • written 15.4 years ago by ▴ 940
0
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2
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1.4k
views
Creating Custom CDF
cdf makecdfenv cdf makecdfenv
updated 15.6 years ago by 68k • written 15.6 years ago by ▴ 40
0
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2
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1.4k
views
Using Affymetrix PM chips with Bioconductor
Annotation cdf probe makecdfenv Annotation cdf probe makecdfenv
updated 15.9 years ago by ★ 1.2k • written 15.9 years ago by ▴ 20
0
votes
2
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1.3k
views
Creating Affymetrix CDF files
cdf probe makecdfenv convert cdf probe makecdfenv convert
updated 16.1 years ago by ★ 6.5k • written 16.1 years ago by ▴ 20
0
votes
2
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1.2k
views
makecdfenv crashes
cdf affy makecdfenv cdf affy makecdfenv
updated 16.2 years ago by 68k • written 16.2 years ago by ▴ 60
0
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1
reply
1.4k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 16.2 years ago by ▴ 140 • written 16.2 years ago by 68k
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1
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968
views
gcrma problem
cdf affy makecdfenv gcrma cdf affy makecdfenv gcrma
updated 16.5 years ago by 68k • written 16.5 years ago by ▴ 40
0
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5
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1.4k
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makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array
cdf probe makecdfenv cdf probe makecdfenv
updated 16.8 years ago by 21k • written 16.8 years ago by ★ 2.0k
0
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1
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1.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.4 years ago by ★ 1.2k • written 17.4 years ago by ★ 2.4k
0
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1
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1.0k
views
error in makecdfenv
makecdfenv makecdfenv
updated 17.4 years ago by 68k • written 17.4 years ago by ▴ 130
0
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2
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1.3k
views
how to make probe environments for use with GCRMA
cdf makecdfenv gcrma cdf makecdfenv gcrma
updated 17.6 years ago by ▴ 50 • written 17.6 years ago by ▴ 290
0
votes
9
replies
2.1k
views
gcrma error? - linked to makeProbePackage ?
cdf probe affy makecdfenv gcrma matchprobes cdf probe affy makecdfenv gcrma matchprobes
updated 17.6 years ago by 68k • written 17.6 years ago by ▴ 90
0
votes
6
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1.4k
views
mas5calls with make.cdf.env
cdf probe makecdfenv cdf probe makecdfenv
updated 17.7 years ago by 68k • written 17.7 years ago by ★ 1.3k
0
votes
3
replies
1.9k
views
CDF package in R (windows)
cdf affy makecdfenv cdf affy makecdfenv
17.7 years ago Salim Charaniya ▴ 20
0
votes
4
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2.1k
views
affyPLM and exon array question
cdf affy makecdfenv affyPLM cdf affy makecdfenv affyPLM
updated 17.8 years ago by ★ 1.2k • written 17.8 years ago by ▴ 30
0
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1
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1.3k
views
making a cdf file for expression analysis on a tiling array
cdf affy makecdfenv cdf affy makecdfenv
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 60
0
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0
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995
views
(no subject)
cdf affy makecdfenv convert cdf affy makecdfenv convert
18.1 years ago Charlyn Suarez ▴ 10
0
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4
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1.4k
views
makecdfenv
cdf makecdfenv cdf makecdfenv
updated 18.2 years ago by 25k • written 18.2 years ago by ★ 13k
0
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1
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1.3k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 18.3 years ago by 68k • written 18.3 years ago by ★ 2.2k
0
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5
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2.0k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 18.3 years ago by ▴ 20 • written 18.3 years ago by ★ 2.2k
0
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5
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1.8k
views
Affymetrix Promoter tiling array
cdf makecdfenv cdf makecdfenv
18.5 years ago Wu, Xiwei ▴ 350
0
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1
reply
1.2k
views
new user trying to create a cdf package for custom array
cdf probe affy makecdfenv cdf probe affy makecdfenv
updated 18.5 years ago by 68k • written 18.5 years ago by ▴ 20
0
votes
2
replies
2.7k
views
Importing CDF file for custom array using makecdfenv
cdf affy makecdfenv cdf affy makecdfenv
updated 18.5 years ago by ▴ 120 • written 18.5 years ago by ▴ 340
0
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0
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886
views
makecdfenv, bg.correct
affy makecdfenv affy makecdfenv
18.8 years ago Justin Borevitz ▴ 170
0
votes
1
reply
978
views
Fusarium CDF
cdf makecdfenv cdf makecdfenv
updated 18.8 years ago by 68k • written 18.8 years ago by ▴ 30
0
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1
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1.2k
views
Small bug in function 'countskip.FASTA.entries' from package 'altcdfenvs'
probe affy makecdfenv matchprobes altcdfenvs probe affy makecdfenv matchprobes altcdfenvs
updated 19.2 years ago by ▴ 950 • written 19.2 years ago by ▴ 190
0
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0
replies
1.1k
views
How do I install custom made CDF in Bioconductor
cdf makecdfenv cdf makecdfenv
19.5 years ago Ruppert Valentino ▴ 270
0
votes
1
reply
785
views
makecdfenv makePlatformDesign bigendian
makecdfenv makePlatformDesign makecdfenv makePlatformDesign
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 30
0
votes
1
reply
1.2k
views
affymetrix CDF file problem
cdf makecdfenv cdf makecdfenv
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 80
0
votes
3
replies
1.5k
views
Working flow_own CEL file reading problem
Normalization cdf affy makecdfenv Normalization cdf affy makecdfenv
updated 19.7 years ago by 68k • written 19.7 years ago by ▴ 40
0
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0
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972
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
cdf probe makecdfenv cdf probe makecdfenv
19.7 years ago Seth Falcon ★ 7.4k
0
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0
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994
views
make own CDF package probelm, error:couldn't find function "make.cdf.env"
Microarray Cancer cdf probe makecdfenv Microarray Cancer cdf probe makecdfenv
19.7 years ago James W. MacDonald 68k
0
votes
1
reply
959
views
makecdfenv bug
GO makecdfenv GO makecdfenv
updated 19.8 years ago by ★ 7.4k • written 19.8 years ago by ▴ 140
0
votes
2
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1.2k
views
Missing probesets
cdf affy makecdfenv cdf affy makecdfenv
updated 19.8 years ago by ★ 5.5k • written 19.8 years ago by ▴ 110
0
votes
1
reply
1.2k
views
solicitation for Affy bovine cdf environment
cdf affy makecdfenv cdf affy makecdfenv
updated 19.8 years ago by 68k • written 19.8 years ago by ▴ 10
50 results • Page 1 of 1
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Answer: DESeq2 adujsted p-value cutoff seemingly not working by James W. MacDonald 68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by SofieK • 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data by deltaexploitss • 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Comment: GenomeInfoDbData cannot install in R and warning had non-zero exit status by Renuka • 0
how you did it pls explain
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode = by James W. MacDonald 68k
If I understand correctly, you want to assess differential transcript abundances. If so, there are a couple of ways you can do that. One wa…
Votes
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Answer: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
Comment: Unused arguments error without used arguments in GSVA?
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