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Showing :
makeTxDbFromGFF
•
reset
2
votes
2
replies
966
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
16 months ago
stacy.genovese
• 0
3
votes
4
replies
2.8k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 3.9 years ago by
James W. MacDonald
66k • written 3.9 years ago by
nishanthemje
• 0
0
votes
0
replies
1.6k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
5.2 years ago
xvazquezc
• 0
0
votes
1
reply
1.2k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
5.6 years ago
csijcs
• 0
0
votes
2
replies
2.4k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 5.7 years ago by
Hervé Pagès
16k • written 5.8 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.4k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 6.0 years ago by
daniel.vantwisk
▴ 50 • written 6.0 years ago by
marisa.e.miller
• 0
0
votes
0
replies
929
views
Error using the makeTxDbFromGFF
maketxdbfromgff
6.4 years ago
bright602
• 0
0
votes
1
reply
4.0k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
6.6 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
3.7k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 6.8 years ago by
Hervé Pagès
16k • written 7.0 years ago by
marc_bes
• 0
1
vote
2
replies
1.1k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 7.4 years ago by
Hervé Pagès
16k • written 7.4 years ago by
TFony
▴ 10
3
votes
2
replies
2.3k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Marlin
▴ 20
1
vote
2
replies
1.4k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 8.2 years ago by
Hervé Pagès
16k • written 8.2 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.3k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.2 years ago by
Valerie Obenchain
★ 6.8k • written 8.2 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
1.7k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
8.2 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
976
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
8.4 years ago
Udi Landau
▴ 30
8
votes
7
replies
3.6k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
1.9k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.2k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
8.6 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.0k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
rebecca.halbach
• 0
0
votes
7
replies
2.4k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
8.7 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.2k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
yacine.badis
• 0
0
votes
2
replies
2.1k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
pterry
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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