Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
makeTxDBFromGFF
•
reset
2
votes
2
replies
1.4k
views
Problem with MakeTxDbFromGFF
makeTxDbFromGff
23 months ago
stacy.genovese
• 0
3
votes
4
replies
3.5k
views
Saving and retrieving TxDB object
makeTxDBFromGFF
EISA
updated 4.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
nishanthemje
• 0
0
votes
0
replies
1.8k
views
error with makeTxDbFromGFF
genomicfeatures
gff
custom genome
makeTxDbFromGFF
makeTxDbFromGRanges
5.8 years ago
xvazquezc
• 0
0
votes
1
reply
1.4k
views
Error in .merge_transcript_parts(transcripts)
maketxdbfromgff
6.2 years ago
csijcs
• 0
0
votes
2
replies
2.6k
views
makeTxDbFromGFF errors too many NAs and make.splicings
maketxdbfromgff
limma
updated 6.3 years ago by
Hervé Pagès
16k • written 6.4 years ago by
Karl Lundén
▴ 20
0
votes
1
reply
1.7k
views
makeTxDbFromGFF error "stop codons that cannot be mapped to an exon"
genomicfeatures
txdb
maketxdbfromgff
updated 6.6 years ago by
daniel.vantwisk
▴ 50 • written 6.6 years ago by
marisa.e.miller
• 0
0
votes
0
replies
1.1k
views
Error using the makeTxDbFromGFF
maketxdbfromgff
7.0 years ago
bright602
• 0
0
votes
1
reply
4.3k
views
create a txdb using makeTxDbFromGFF
bioconductor
txdb
maketxdbfromgff
7.2 years ago
Nader.Aryamanesh
• 0
0
votes
3
replies
4.1k
views
makeTxDbFromGFF Error: subscript contains NAs
genomicfeatures
granges
maketxdbfromgff
updated 7.4 years ago by
Hervé Pagès
16k • written 7.6 years ago by
marc_bes
• 0
1
vote
2
replies
1.3k
views
Error while using GenomicFeatures package
genomicfeatures
maketxdbfromgff
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
TFony
▴ 10
3
votes
2
replies
2.5k
views
makeTxDbFromGFF drops genes which have multiple chromosome locations. (with iGenome GTF)
genomicfeatures
gtf
maketxdbfromgff
iGenome
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Marlin
▴ 20
1
vote
2
replies
1.5k
views
mRNA start used instead of gene start in makeTxDbFromGFF
maketxdbfromgff
genomicfeatures
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
TimothéeFlutre
▴ 80
4
votes
2
replies
1.5k
views
distinguish DataSource from Provider and ProviderVersion in makeTxDbPackage
genomicfeatures
txdb
maketxdbfromgff
metadata
updated 8.8 years ago by
Valerie Obenchain
★ 6.8k • written 8.8 years ago by
TimothéeFlutre
▴ 80
0
votes
5
replies
2.0k
views
makeTxDbFromGFF returns empty object
genomicfeatures
txdb
maketxdbfromgff
8.8 years ago
TimothéeFlutre
▴ 80
0
votes
0
replies
1.1k
views
Annotation missing when using makeTxDbFromGFF
makeTxDbFromGFF
9.0 years ago
Udi Landau
▴ 30
8
votes
7
replies
4.0k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 9.1 years ago by
Hervé Pagès
16k • written 9.1 years ago by
gokcen.eraslan
▴ 10
0
votes
7
replies
2.1k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
Karolin Wiedemann
• 0
0
votes
0
replies
1.3k
views
Get wrong tx_type when using GenomicFeatures::makeTxDbFromGTF
genomicfeatures
maketxdbfromgff
tx_type
gtf
9.2 years ago
Karolin Wiedemann
• 0
0
votes
4
replies
2.2k
views
MakeTxDbFromGFF creates empty object
maketxdbfromgff
updated 9.2 years ago by
Hervé Pagès
16k • written 9.2 years ago by
rebecca.halbach
• 0
0
votes
7
replies
2.6k
views
makeTxDbFromGFF yields an empty TxDb
annotation
maketxdbfromgff
genomicfeatures
9.3 years ago
José Luis Lavín
▴ 10
0
votes
2
replies
2.5k
views
makeTxDbpackage after makeTxDbfromGFF --> Error in spc[[2]] : subscript out of bounds
gtf
TxDb
maketxdbfromgff
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
yacine.badis
• 0
0
votes
2
replies
2.3k
views
makeTxDbFromGFF not capturing/displaying 'gene' records from GFF3 file.
genomicfeatures
makeTxDbFromGFF
updated 9.8 years ago by
Hervé Pagès
16k • written 9.8 years ago by
pterry
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
Blair
• 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexploitss
• 0
Data input is the adding of data into a computer. This can take place through an input device such as a keyboard. A user inputs data, which…
Votes
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
What benchmark should I use for setting the EdgeR filterByExpr min.count parameter?
Awards
• All
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Teacher
to
Gordon Smyth
52k
Scholar
to
James W. MacDonald
68k
Popular Question
to
Sara
▴ 20
Scholar
to
Michael Love
43k
Locations
• All
United States,
10 minutes ago
The city by the bay,
27 minutes ago
Italy,
51 minutes ago
UPF, Barcelona, Spain,
1 hour ago
United States,
2 hours ago
Traffic: 435 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6