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Replies
Comment: Why the order of sample names in the beta matrix affect the analysis results of
by
81becky
•
0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
Blair
•
0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts.
[1…
Comment: error in ChAMP loading file
by
81becky
•
0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results'
```
On p-values:
By default, independent filtering is performed to select a set of
genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
•
0
Thank you, I will try this and see.
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