Bioconductor Ma-plot

Showing : ma-plot • reset

3

votes

3

replies

1.6k

views

limma Microarray AgilentChip MA-plot Normalization

3.9 years ago FedeXandeR • 0

1

vote

4

replies

1.2k

views

ma-plot deseq2

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by vincentpailler • 0

0

votes

0

replies

751

views

ma-plot

6.4 years ago vincentpailler • 0

2

votes

2

replies

2.9k

views

deseq2 MA-plot

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by Mike ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Awards • All