Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

22 months ago davidhillis • 0

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794

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genomiclocation canonicaltranscripts locateVariants

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by Paola • 0

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1.7k

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variantannotation locatevariants metadata mcols

updated 7.1 years ago by Valerie Obenchain ★ 6.8k • written 7.1 years ago by enricoferrero ▴ 680

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1.3k

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variantannotation predict coding locateVariants granges

7.3 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.5 years ago Aleksandra • 0

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1.6k

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Lna • 0

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2.9k

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locatevariants variantannotation genomicfeatures

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by Lna • 0

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2.4k

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variantannotation locatevariants

9.4 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

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Comment: Identifying potentially associated gene set to drug response using GSVA by kl2023gege • 0

Thanks for sharing. You gotta check out Sprunki Phase Games on [Sprunki Phase](https://sprunkiphase.net). It's a wild ride of tunes and tw…

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0