Bioconductor Locatevariants

Showing : locatevariants • reset

votes

replies

2.0k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

20 months ago • updated 19 months ago davidhillis • 0

votes

755

views

genomiclocation canonicaltranscripts locateVariants

updated 3.2 years ago by James W. MacDonald 67k • written 3.2 years ago by Paola • 0

votes

replies

1.6k

views

variantannotation locatevariants metadata mcols

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by enricoferrero ▴ 660

votes

1.3k

views

variantannotation predict coding locateVariants granges

7.0 years ago tony j • 0

votes

replies

1.8k

views

locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.2 years ago Aleksandra • 0

votes

replies

1.6k

views

txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by Lna • 0

vote

replies

2.8k

views

locatevariants variantannotation genomicfeatures

updated 8.0 years ago by Michael Lawrence ★ 11k • written 8.0 years ago by Lna • 0

vote

replies

2.4k

views

variantannotation locatevariants

9.2 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Volcano plot has many values around zero by Michael Love 42k

It's positive over zero or nearly so.

Answer: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.

Comment: Volcano plot has many values around zero by mjun • 0

Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks

Comment: Volcano plot has many values around zero by swbarnes2 ★ 1.4k

I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…

Votes

Comment: Weird looking volcano plot

Volcano plot has many values around zero

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Awards • All

Popular Question to Dario Strbenac ★ 1.5k

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k