Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
locatevariants
•
reset
4
votes
8
replies
2.0k
views
TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from various chromosome being part of the same gene
MetID
TxDB.Hsapiens.UCSC.hg38.knownGene
locateVariants
GenomicFeatures
VariantAnnotation
20 months ago
davidhillis
• 0
0
votes
1
reply
766
views
Information about locateVariants function
genomiclocation
canonicaltranscripts
locateVariants
updated 3.2 years ago by
James W. MacDonald
67k • written 3.2 years ago by
Paola
• 0
2
votes
2
replies
1.6k
views
[VariantAnnotation] Preserve query metadata with locateVariants()
variantannotation
locatevariants
metadata
mcols
updated 6.9 years ago by
Valerie Obenchain
★ 6.8k • written 6.9 years ago by
enricoferrero
▴ 660
0
votes
1
reply
1.3k
views
predictCoding errors with: sequence ^1$ not found
variantannotation
predict coding
locateVariants
granges
7.1 years ago
tony j
• 0
0
votes
2
replies
1.8k
views
locateVariants function does not find an annotation for the locus
locatevariants
txdb.hsapiens.ucsc.hg19.knowngene
variantannotation
7.3 years ago
Aleksandra
• 0
0
votes
2
replies
1.6k
views
SNPs in multiple locations
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
annotation
locatevariants
variantannotation
updated 7.4 years ago by
Valerie Obenchain
★ 6.8k • written 7.4 years ago by
Lna
• 0
1
vote
23
replies
2.8k
views
Distance calculation for variants in intergenic regions
locatevariants
variantannotation
genomicfeatures
updated 8.0 years ago by
Michael Lawrence
★ 11k • written 8.0 years ago by
Lna
• 0
1
vote
4
replies
2.4k
views
variantAnnotation::locateVariants() with AllVariants(): why do some input variants not get annotated?
variantannotation
locatevariants
9.2 years ago
Jakob Goldmann
• 0
8 results • Page
1 of 1
Recent ...
Replies
Answer: Deseq2 res Function
by
Michael Love
43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR
by
Gordon Smyth
51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data
by
Gordon Smyth
51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Awards
• All
Popular Question
to
Gordon Smyth
51k
Popular Question
to
sap275
▴ 10
Popular Question
to
mhem
▴ 10
Popular Question
to
Anna
▴ 20
Scholar
to
Haibo Liu
▴ 20
Locations
• All
UPF, Barcelona, Spain,
28 minutes ago
United States,
45 minutes ago
France,
1 hour ago
Russia,
1 hour ago
WEHI, Melbourne, Australia,
2 hours ago
Traffic: 520 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6