Bioconductor Locatevariants

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MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.1 years ago davidhillis • 0

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826

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genomiclocation canonicaltranscripts locateVariants

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by Paola • 0

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1.8k

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variantannotation locatevariants metadata mcols

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by enricoferrero ▴ 680

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1.4k

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variantannotation predict coding locateVariants granges

7.5 years ago tony j • 0

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locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.6 years ago Aleksandra • 0

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txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by Lna • 0

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3.2k

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locatevariants variantannotation genomicfeatures

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Lna • 0

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2.5k

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variantannotation locatevariants

9.6 years ago Jakob Goldmann • 0

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Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Answer: Having Trouble Using CNE12() and CNE21() in CNEr by 1324087964 • 0

![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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Popular Question to bioinformaticssrm2011 • 0