Bioconductor Locatevariants

Showing : locatevariants • reset

votes

replies

2.5k

views

MetID TxDB.Hsapiens.UCSC.hg38.knownGene locateVariants GenomicFeatures VariantAnnotation

2.1 years ago davidhillis • 0

votes

838

views

genomiclocation canonicaltranscripts locateVariants

updated 3.6 years ago by James W. MacDonald 68k • written 3.6 years ago by Paola • 0

votes

replies

1.8k

views

variantannotation locatevariants metadata mcols

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by enricoferrero ▴ 680

votes

1.4k

views

variantannotation predict coding locateVariants granges

7.5 years ago tony j • 0

votes

replies

1.9k

views

locatevariants txdb.hsapiens.ucsc.hg19.knowngene variantannotation

7.7 years ago Aleksandra • 0

votes

replies

1.8k

views

txdb.hsapiens.ucsc.hg19.knowngene ucsc annotation locatevariants variantannotation

updated 7.8 years ago by Valerie Obenchain ★ 6.8k • written 7.8 years ago by Lna • 0

vote

replies

3.2k

views

locatevariants variantannotation genomicfeatures

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by Lna • 0

vote

replies

2.5k

views

variantannotation locatevariants

9.7 years ago Jakob Goldmann • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

Awards • All