Bioconductor Lncrna

Showing : lncrna • reset

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488

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lncRNA probeID mRNA genesymbol

23 months ago Sooni ▴ 10

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1.6k

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recount RNAseq gencode lncRNA gene annotation

updated 5.8 years ago by chris.wilks ▴ 70 • written 5.8 years ago by francesco.gandolfi ▴ 20

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1.7k

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GenomicFeatures TPM FPKM lncRNA

6.7 years ago Ina Hoeschele ▴ 620

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3.6k

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lncRNA featureCounts STAR annotation

updated 6.7 years ago by Wei Shi ★ 3.6k • written 6.7 years ago by inah ▴ 10

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1.6k

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microarray lncrna microrna mrna raw data

updated 7.1 years ago by Axel Klenk ★ 1.0k • written 7.2 years ago by ntagaras • 0

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3.4k

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arraystar lncRNA annotation annotationdbi

updated 9.4 years ago by xiangy7 • 0 • written 9.9 years ago by Kevin Coombes ▴ 430

6 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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