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lncRNA
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how to convert lncRNA probe name or mRNA probe name to gene symbol
lncRNA
probeID
mRNA
genesymbol
16 months ago
Sooni
▴ 10
3
votes
3
replies
1.4k
views
Recount data for unannotated genes
recount
RNAseq
gencode
lncRNA
gene annotation
updated 5.2 years ago by
chris.wilks
▴ 70 • written 5.3 years ago by
francesco.gandolfi
▴ 20
0
votes
1
reply
1.5k
views
TPM and FPKM for lncRNA
GenomicFeatures
TPM
FPKM
lncRNA
6.1 years ago
Ina Hoeschele
▴ 620
0
votes
2
replies
3.1k
views
lncRNA annotation for featureCouns and STAR
lncRNA
featureCounts
STAR
annotation
updated 6.1 years ago by
Wei Shi
★ 3.6k • written 6.1 years ago by
inah
▴ 10
0
votes
2
replies
1.4k
views
R packages for differential expression analysis of raw data from arraystar microarrays
microarray
lncrna
microrna
mrna
raw data
updated 6.6 years ago by
Axel Klenk
★ 1.0k • written 6.6 years ago by
ntagaras
• 0
0
votes
3
replies
3.2k
views
Annotation DB for ArrayStar lncRNA arrays
arraystar
lncRNA
annotation
annotationdbi
updated 8.9 years ago by
xiangy7
• 0 • written 9.3 years ago by
Kevin Coombes
▴ 430
6 results • Page
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Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types)
by
Michael Love
42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results
by
Michael Love
42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results
by
V_Vibes
• 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
Votes
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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