Bioconductor Lmer

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1.9k

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limma lmer duplicateCorrelation technicalrepeats

4 months ago • updated 3 months ago john • 0

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558

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lmer MAST DifferentialExpression

8 months ago nhaus ▴ 70

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1.2k

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limma caret lm lmer lme4

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Sindre ▴ 110

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bumphunter minfi lmer dmrcate dmr analysis

updated 6.8 years ago by Tim Peters ▴ 230 • written 6.8 years ago by Ashlynn • 0

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3.6k

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illumina450k limma lme4 lmer

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by DSP • 0

5 results • Page 1 of 1

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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