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lipidomics
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
Normalization
Lipidomics
lipidr
5 weeks ago
David R
▴ 90
1
vote
0
replies
2.0k
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics
Metabolomics
limma
Normalization
3.5 years ago
pgugger
▴ 70
0
votes
0
replies
647
views
when to use filter_by_cv() function from the lipidr package
Lipidomics
lipidr
lipi
4.1 years ago
eme
• 0
1
vote
0
replies
999
views
Job:
Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics
lipidomics
clinical research
data integration
biostatistics
Job
4.9 years ago
Tommi Suvitaival
▴ 10
0
votes
0
replies
1.4k
views
Shotgun lipidomics analysis
shotgun lipidomics
lipidomics
mass spectrometry
9.0 years ago
Titan
• 0
1
vote
3
replies
2.8k
views
XCMS2 on MSMS data
xcms
metabolomics
massspectrometry
lipidomics
bioconductor
9.0 years ago
Titan
• 0
0
votes
3
replies
2.4k
views
Problem with XCMS
xcms
metabolomics
lipidomics
proteomics
massspectrometry
9.0 years ago
Titan
• 0
0
votes
4
replies
3.2k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms
metabolomics
lipidomics
statistics
9.0 years ago
Titan
• 0
0
votes
0
replies
1.5k
views
Bioinformatics position available in lipidomics biomarker research
Lipidomics
Lipidomics
15.2 years ago
Michael Eiden
▴ 10
9 results • Page
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Comment: Identifying potentially associated gene set to drug response using GSVA
by
coolmathforkids2
• 0
It is always helpful to see clear explanations and solutions for bioconductor related challenges. Posts like this make the community a valu…
Comment: minfi latest update for EPIC V2 chip
by
macdonaldfrench7286566
• 0
Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…
Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Gordon Smyth
52k
Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.
Comment: edgeR + tximport: calcNormFactors and the usage of offsets
by
Andre
• 0
But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…
Votes
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor
A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
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