Bioconductor Liftover

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liftOver SNP GWASTools

21 months ago bonheur • 0

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2.0k

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lifto liftOver

updated 2.6 years ago by Marcel Ramos 700 • written 2.6 years ago by james.dalgleish • 0

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2.0k

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liftOver rtracklayer

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Mikhail Dozmorov ▴ 30

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1.8k

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liftOver

updated 4.1 years ago by shepherl 4.1k • written 4.1 years ago by bluepebbles • 0

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1.1k

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liftOver

4.1 years ago geneprophet • 0

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1.5k

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hg19 liftover matrixeqtl DMRcate

updated 5.6 years ago by James W. MacDonald 67k • written 5.6 years ago by yoursbassanio ▴ 10

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1.5k

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rtracklayer export.bw liftover

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by ang ▴ 20

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1.4k

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rtracklayer liftOver parameters minMatch

updated 6.7 years ago by Michael Lawrence ★ 11k • written 6.7 years ago by Nik dAK ▴ 10

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3.3k

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rtracklayer liftover bioconductor R

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by m.guelfi • 0

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1.9k

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liftover rtracklayer

updated 7.4 years ago by Michael Lawrence ★ 11k • written 7.4 years ago by beausoleilmo • 0

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2.5k

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software error liftOver workflowinstall package installation

updated 8.2 years ago by James W. MacDonald 67k • written 8.2 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Votes

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

Awards • All

Teacher to dsull ▴ 40