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liftover
•
reset
0
votes
0
replies
833
views
Human to mouse SNP conversion
liftOver
SNP
GWASTools
24 months ago
bonheur
• 0
2
votes
2
replies
2.2k
views
broken chain import in liftOver
lifto
liftOver
updated 2.8 years ago by
Marcel Ramos
700 • written 2.8 years ago by
james.dalgleish
• 0
2
votes
3
replies
2.1k
views
liftOver bug, reproducible
liftOver
rtracklayer
updated 4.1 years ago by
James W. MacDonald
68k • written 4.1 years ago by
Mikhail Dozmorov
▴ 30
0
votes
1
reply
1.9k
views
How to convert build 37 to build 38?
liftOver
updated 4.3 years ago by
shepherl
4.1k • written 4.3 years ago by
bluepebbles
• 0
0
votes
0
replies
1.1k
views
liftOver (R-package) how to recognize the "#Partially deleted in new" in the result ???
liftOver
4.3 years ago
geneprophet
• 0
1
vote
3
replies
1.5k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.5k
views
rtracklayer::Problem with export.bw of GRanges object created by unlisted after liftover from mm9 to mm10 of wig file
rtracklayer
export.bw
liftover
updated 6.3 years ago by
Michael Lawrence
★ 11k • written 6.3 years ago by
ang
▴ 20
0
votes
1
reply
1.5k
views
rtracklayer::liftOver parameters (minMatch)
rtracklayer
liftOver
parameters
minMatch
updated 6.9 years ago by
Michael Lawrence
★ 11k • written 6.9 years ago by
Nik dAK
▴ 10
2
votes
3
replies
3.4k
views
rtracklayer::lifOver one-to-many regions and not match UCSC
rtracklayer
liftover
bioconductor
R
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
m.guelfi
• 0
0
votes
2
replies
2.0k
views
liftOver function in rtracklayer package is not working
liftover
rtracklayer
updated 7.6 years ago by
Michael Lawrence
★ 11k • written 7.6 years ago by
beausoleilmo
• 0
2
votes
10
replies
2.6k
views
Trouble Installing lifOver workflow
software error
liftOver
workflowinstall
package installation
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
JustGettinStarted
• 0
11 results • Page
1 of 1
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Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages?
by
wilkinson
• 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification
by
ATpoint
★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Hoover
• 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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