Bioconductor LiftOver

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785

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liftOver SNP GWASTools

22 months ago bonheur • 0

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2.1k

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lifto liftOver

updated 2.7 years ago by Marcel Ramos 700 • written 2.7 years ago by james.dalgleish • 0

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2.0k

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liftOver rtracklayer

updated 4.0 years ago by James W. MacDonald 67k • written 4.0 years ago by Mikhail Dozmorov ▴ 30

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1.8k

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liftOver

updated 4.2 years ago by shepherl 4.1k • written 4.2 years ago by bluepebbles • 0

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1.1k

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liftOver

4.2 years ago geneprophet • 0

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1.5k

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hg19 liftover matrixeqtl DMRcate

updated 5.7 years ago by James W. MacDonald 67k • written 5.7 years ago by yoursbassanio ▴ 10

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1.5k

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rtracklayer export.bw liftover

updated 6.2 years ago by Michael Lawrence ★ 11k • written 6.2 years ago by ang ▴ 20

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1.4k

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rtracklayer liftOver parameters minMatch

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by Nik dAK ▴ 10

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3.3k

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rtracklayer liftover bioconductor R

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by m.guelfi • 0

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1.9k

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liftover rtracklayer

updated 7.5 years ago by Michael Lawrence ★ 11k • written 7.5 years ago by beausoleilmo • 0

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2.6k

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software error liftOver workflowinstall package installation

updated 8.3 years ago by James W. MacDonald 67k • written 8.3 years ago by JustGettinStarted • 0

11 results • Page 1 of 1

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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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