Bioconductor Library

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Bioconductor Install library biocmanager

updated 19 months ago by Vincent J. Carey, Jr. 6.7k • written 19 months ago by Ndimensional ▴ 20

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4.2k

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library composition vst DESeq2 Normalization

3.3 years ago kristoffersandas • 0

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1.3k

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getAE ae2bioc bioconductor packages library

updated 5.5 years ago by Mike Smith ★ 6.6k • written 5.5 years ago by kodherif • 0

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2.8k

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opencyto fatal error library

updated 7.7 years ago by Jiang, Mike ★ 1.3k • written 7.7 years ago by Maria • 0

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1.8k

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MotifDb library load

updated 8.0 years ago by Paul Shannon ▴ 470 • written 8.0 years ago by Pengcheng Yang ▴ 60

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2.9k

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software error bug library

updated 8.1 years ago by Welliton de Souza ▴ 70 • written 8.1 years ago by guus.steeg ▴ 10

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1.5k

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bioconductor R library software error ALL library

8.1 years ago alyssa.ylescu • 0

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3.3k

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qvalue library software error package installation package updates

8.3 years ago tah340 • 0

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installation windows10 not-writable warning message library

9.3 years ago juancaf • 0

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3.8k

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installation dependency library hdf5

9.5 years ago Ulrik Stervbo ▴ 30

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5.3k

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variantannotation library error

updated 9.5 years ago by Valerie Obenchain ★ 6.8k • written 9.5 years ago by kmu004 ▴ 50

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1.8k

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version release library

updated 9.9 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.9 years ago by Malcolm Cook ★ 1.6k

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1.6k

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library characters

10.2 years ago Patrick Schorderet ▴ 20

13 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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