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Bioconductor Install library biocmanager

updated 18 months ago by Vincent J. Carey, Jr. 6.7k • written 18 months ago by Ndimensional ▴ 20

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3.9k

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library composition vst DESeq2 Normalization

3.2 years ago kristoffersandas • 0

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1.3k

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getAE ae2bioc bioconductor packages library

updated 5.4 years ago by Mike Smith ★ 6.6k • written 5.4 years ago by kodherif • 0

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2.8k

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opencyto fatal error library

updated 7.6 years ago by Jiang, Mike ★ 1.3k • written 7.6 years ago by Maria • 0

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1.8k

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MotifDb library load

updated 7.9 years ago by Paul Shannon ▴ 470 • written 7.9 years ago by Pengcheng Yang ▴ 60

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software error bug library

updated 8.0 years ago by Welliton de Souza ▴ 70 • written 8.0 years ago by guus.steeg ▴ 10

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1.5k

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bioconductor R library software error ALL library

8.0 years ago alyssa.ylescu • 0

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3.2k

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qvalue library software error package installation package updates

8.2 years ago tah340 • 0

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3.2k

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installation windows10 not-writable warning message library

9.2 years ago juancaf • 0

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3.7k

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installation dependency library hdf5

9.4 years ago Ulrik Stervbo ▴ 30

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5.2k

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variantannotation library error

updated 9.4 years ago by Valerie Obenchain ★ 6.8k • written 9.4 years ago by kmu004 ▴ 50

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1.7k

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version release library

updated 9.9 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.9 years ago by Malcolm Cook ★ 1.6k

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1.6k

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library characters

10.1 years ago Patrick Schorderet ▴ 20

13 results • Page 1 of 1

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Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Comment: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k

I think I explained what the differences between approach 1 and 2 is in my answer. I assume that the tutorial uses vst because it is varian…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

Thank you ATpoint for your responses. I am a bit confused because the difference between the two approaches is the selection of the genes…

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Bioconductor Course, Kenya 2025: Applications Open!

Comment: can't install tscR

Answer: Csaw normalization strategies - general inquiry

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

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