Bioconductor Knitr

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1.0k

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RStudio MOFA2 bug knitr

updated 2.0 years ago by James W. MacDonald 67k • written 2.0 years ago by Kevin Coombes ▴ 430

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replies

980

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knitr boxplot

updated 4.8 years ago by James W. MacDonald 67k • written 4.8 years ago by poojitha.stemcell ▴ 10

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1.3k

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rmarkdown knitr

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Keith Hughitt ▴ 180

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16k

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rmarkdown rstudio knitr

8.1 years ago Jon Bråte ▴ 260

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2.0k

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software error knitr

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by idomtamir ▴ 10

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1.5k

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knitr vignettes built bioccheck no-ASCII

8.6 years ago kmezhoud ▴ 10

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Comment: Consistent Decimals In Data After Antibody Array Background Correction Using Lim by Ai • 0

Hi Gordon, Thank you so much for answering my question and confirming that this is expected! I will go ahead note this down. Sincerely, …

Answer: Annotation for EPICv2 by icecreamlover • 0

Hello, I am also working on analyzing my data from EPICv2 using ChAMP. I used this resource as a guide: https://github.com/YuanTian1991/ChA…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

And it doesn't matter if you're doing gene set analyses after, if the statistics are questionable to begin with.

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by James W. MacDonald 67k

If you're saying that (as an example) you have treated and control in both assay types, and you want to combine and make comparisons betwee…

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k

I have contacted NCBI, and meanwhile got an an answer. See below. It turns out that the official, HGNC-approved symbols are present in the…

Votes

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Answer: DecideTest vs topTAGs in edgeR

Comment: DESeq Input from Salmon + tximport/tximeta

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