Showing : keggsoap • reset
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KEGGSOAP:: KEGGxmlns object not found
keggsoap keggrest
6.1 years ago doctor.dee005 • 0
1
vote
5
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2.1k
views
About the state of KEGG-related packages
KEGGSOAP KEGGgraph keggorthology clusterProfiler KEGGprofile PathNet KEGGSOAP KEGGgraph
updated 10.9 years ago by ★ 1.6k • written 10.9 years ago by ▴ 660
1
vote
16
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2.1k
views
error installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 420
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0
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1.1k
views
KEGGREST package is available in devel
KEGGSOAP KEGGREST KEGGSOAP KEGGREST
11.5 years ago Dan Tenenbaum ★ 8.2k
0
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1
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846
views
Problem in KEGGSOAP package
KEGGSOAP KEGGSOAP
updated 11.5 years ago by ★ 8.2k • written 11.5 years ago by ▴ 120
0
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2
replies
1.0k
views
KEGGSOAP: list.pathways(org) or alternative way
Pathways Organism KEGGSOAP Pathways Organism KEGGSOAP
updated 11.9 years ago by ★ 7.2k • written 11.9 years ago by ▴ 30
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5
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1.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.3 years ago by ▴ 20 • written 12.3 years ago by ▴ 110
0
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1
reply
1.3k
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 12.3 years ago by ▴ 830 • written 12.3 years ago by ▴ 20
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989
views
PostForm() with KEGG
GO Cancer KEGGSOAP GO Cancer KEGGSOAP
12.3 years ago Voke AO ▴ 760
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0
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983
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Problem using KEGGSOAP: multiple genes per identity
Pathways KEGGSOAP Pathways KEGGSOAP
12.4 years ago January Weiner ▴ 240
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2
replies
1.4k
views
A bug in either KEGG or KEGGSOAP?
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.4 years ago by ★ 7.2k • written 12.4 years ago by ▴ 230
0
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1
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815
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.5 years ago by ★ 7.2k • written 12.5 years ago by ▴ 110
0
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1
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1.1k
views
KEGGsoap: Space required after the Public Identifier
KEGGSOAP KEGGSOAP
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 70
0
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1
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859
views
KEGGSOAP incomplete list.pathways
Pathways KEGGSOAP Pathways KEGGSOAP
updated 12.6 years ago by ★ 7.2k • written 12.6 years ago by ★ 13k
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2
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1.1k
views
Problem installing KEGGSOAP
KEGGSOAP KEGGSOAP
updated 12.6 years ago by ★ 8.2k • written 12.7 years ago by ▴ 140
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0
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831
views
SSOAP functions
KEGGSOAP KEGGSOAP
13.1 years ago Michael Gormley ▴ 60
0
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2
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3.4k
views
GEOquery -> cannot open URL 'ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/ ....
KEGGSOAP GEOquery KEGGSOAP GEOquery
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 340
0
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1
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1.5k
views
KEGGSOAP, hgu95av2.db: limited functionality
Pathways hgu95av2 probe KEGGSOAP Pathways hgu95av2 probe KEGGSOAP
updated 14.4 years ago by ★ 7.2k • written 14.4 years ago by ▴ 70
0
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2
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1.0k
views
KEGGSOAP returning blank pages
Cancer KEGGSOAP Cancer KEGGSOAP
updated 14.9 years ago by ★ 7.2k • written 14.9 years ago by ★ 1.9k
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0
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979
views
KEGGSOAP package
KEGGSOAP KEGGSOAP
14.9 years ago Glazko, Galina ▴ 350
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0
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967
views
KEGGSOAP package: I can't retrieve KEGG pathway diagrams
hgu133a KEGGSOAP hgu133a KEGGSOAP
15.0 years ago Paolo Sonego ▴ 140
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3
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1.3k
views
KEGGSOAP: problem with get.pathways.by.genes()
Pathways convert KEGGSOAP Pathways convert KEGGSOAP
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 30
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0
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794
views
KEGGSOAP install problem
Cancer KEGGSOAP Cancer KEGGSOAP
15.2 years ago Daniel Brewer ★ 1.9k
0
votes
4
replies
1.2k
views
KEGGSOAP problem
KEGGSOAP KEGGSOAP
updated 15.2 years ago by 6.7k • written 15.2 years ago by ▴ 350
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2
replies
1.4k
views
KEGGSOAP (installation?) problem
KEGGSOAP KEGGSOAP
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ▴ 140
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3
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1.4k
views
building enzyme centric metabolic network
Network KEGGSOAP Network KEGGSOAP
updated 15.2 years ago by 25k • written 15.2 years ago by ▴ 270
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3
replies
1.3k
views
Retrieving KEGG pathway diagrams via KEGGSOAP
KEGGSOAP KEGGSOAP
updated 15.2 years ago by ▴ 140 • written 15.2 years ago by ▴ 120
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0
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971
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways geneplotter KEGGSOAP biomaRt GEOquery Pathways geneplotter KEGGSOAP biomaRt
15.2 years ago michael watson IAH-C ★ 3.4k
0
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1
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808
views
KEGG pathway IDs ,issing
Annotation Cancer KEGGSOAP Annotation Cancer KEGGSOAP
updated 15.2 years ago by ★ 7.2k • written 15.2 years ago by ★ 1.9k
0
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1
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1.1k
views
KEGGSOAP: color.pathway.by.objects
Pathways KEGGSOAP Pathways KEGGSOAP
updated 16.9 years ago by ★ 2.9k • written 16.9 years ago by ▴ 30
0
votes
3
replies
964
views
libraries or commands to help with parsing or handling web based database queries
PROcess KEGGSOAP PROcess KEGGSOAP
updated 17.4 years ago by ★ 1.7k • written 17.4 years ago by ▴ 40
0
votes
7
replies
1.3k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.6 years ago by ▴ 870 • written 17.6 years ago by ★ 6.0k
0
votes
0
replies
811
views
KEGGSOAP Question: get.pathways.by.compounds
Pathways KEGGSOAP Pathways KEGGSOAP
17.6 years ago Nianhua Li ▴ 870
0
votes
0
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944
views
KEGGSOAP questions: how to handle multiple annotations in R data frames, and why does a "for" loop only use one annotation.
Annotation KEGGSOAP Annotation KEGGSOAP
17.6 years ago ALAN SMITH ▴ 40
0
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2
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1.1k
views
help with KEGG or KEGGSOAP
KEGGSOAP KEGGSOAP
updated 17.6 years ago by ▴ 870 • written 17.6 years ago by ▴ 40
0
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0
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700
views
Inconsistent results returned from KEGG
KEGGSOAP KEGGSOAP
18.3 years ago michael watson IAH-C ★ 3.4k
0
votes
12
replies
2.2k
views
KEGGSOAP
KEGGSOAP KEGGSOAP
updated 18.3 years ago by ★ 7.4k • written 18.3 years ago by ▴ 30
0
votes
0
replies
965
views
problem with get.genes.by.pathway
Biobase reposTools KEGGSOAP Biobase reposTools KEGGSOAP
18.8 years ago Kimpel, Mark W ▴ 890
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1
reply
1.2k
views
Bioconductor Install Problems
Rgraphviz KEGGSOAP Rgraphviz KEGGSOAP
updated 19.5 years ago by ★ 7.4k • written 19.5 years ago by ▴ 10
0
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0
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665
views
mark.pathway.by.objects return NULL
KEGGSOAP KEGGSOAP
19.5 years ago Yi-Xiong Sean Zhou ▴ 50
0
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0
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1.1k
views
KEGGSOAP - Error in xmlName(node[[1]]) : no applicable method for "xmlName"
KEGGSOAP KEGGSOAP
19.5 years ago michael watson IAH-C ★ 3.4k
0
votes
2
replies
889
views
Problems installing KEGGSOAP
KEGGSOAP KEGGSOAP
19.5 years ago michael watson IAH-C ★ 3.4k
0
votes
2
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1.3k
views
pathway analysis package
RBGL KEGGSOAP RBGL KEGGSOAP
updated 19.6 years ago by 21k • written 19.6 years ago by ▴ 60
43 results • Page 1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results by Lluís Revilla Sancho ▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction by Antonio • 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results by alserg ▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results by alserg ▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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