Showing : interactionset • reset
1
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12
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1.8k
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How to calculate p value when comparing two sets of DEGs and not applying interaction
DEGcomparison DESeq2 InteractionSet pvalue
11 months ago paria.alipour • 0
0
votes
3
replies
1.0k
views
Cannot use findOverlaps with 2 GInteractions objects with different ranges.
InteractionSet GInteractions
12 months ago Sarah ▴ 10
1
vote
0
replies
686
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
18 months ago LaureTomas ▴ 10
0
votes
3
replies
1.1k
views
trying to generate an object from a virtual class ("DataFrame")
InteractionSet BuildReport
2.0 years ago martin.grigorov ▴ 10
0
votes
2
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1.4k
views
Converting a GInteractions object to a dataframe
InteractionSet
3.5 years ago noag • 0
0
votes
1
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1.2k
views
Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
updated 4.6 years ago by ★ 28k • written 4.6 years ago by • 0
0
votes
1
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1.1k
views
How to load counts from existing count matrices in diffHic package
diffHic HiC InteractionSet
updated 4.7 years ago by ★ 28k • written 4.7 years ago by • 0
0
votes
2
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1.5k
views
Visualizing 4c-seq as arc
genomicinteractions gviz interactionset
updated 6.1 years ago by ▴ 140 • written 6.1 years ago by • 0
2
votes
1
reply
1.5k
views
Error to rename seqlevels in Granges interactions
interactionset granges
updated 6.6 years ago by ★ 28k • written 6.6 years ago by ▴ 40
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic hic interactionset contactmatrix inflate
updated 7.2 years ago by ★ 28k • written 7.2 years ago by ▴ 20
1
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5
replies
1.6k
views
diffHiC differential HiC analysis starting from Ginteractions object
diffhic interactionset
8.5 years ago Vivek.b ▴ 100
2
votes
1
reply
1.2k
views
cluster (only one end overlapping) breakpoints using InteractionSet
InteractionSet structural variants
updated 8.5 years ago by ★ 28k • written 8.5 years ago by ▴ 200
12 results • Page 1 of 1
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Answer: WGCNA sample-data preprocessing order by ATpoint ★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. …
Answer: WGCNA: Can we use high power (26) for signed network? by ATpoint ★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…
Answer: Ph.D. scholar by ATpoint ★ 4.6k
Hi, WGCNA is not a Bioconductor package, please read the documentation to get guidance. See https://support.bioconductor.org/p/9155561/. C…
Comment: Recount3 data correspond to TCGA data by Fep29 • 0
Hi, This the solution to mapping TCGA ids in Recount3 to the ids used in the TCGA barcodes: library(recount3) human_projects <- …
Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k
There is an example file in the extdata directory of the `minfiData` package that you could emulate.
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