Bioconductor Interactionset

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DEGcomparison DESeq2 InteractionSet pvalue

10 months ago • updated 9 months ago paria.alipour • 0

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984

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InteractionSet GInteractions

11 months ago Sarah ▴ 10

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663

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InteractionSet subsetByOverlaps GenomicInteractions

17 months ago LaureTomas ▴ 10

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1.1k

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InteractionSet BuildReport

23 months ago martin.grigorov ▴ 10

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InteractionSet

3.4 years ago noag • 0

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1.1k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by lklei001 • 0

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1.1k

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diffHic HiC InteractionSet

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by girardot • 0

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1.5k

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genomicinteractions gviz interactionset

updated 6.0 years ago by liz.ingsimmons ▴ 140 • written 6.0 years ago by ferbecneu • 0

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1.5k

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interactionset granges

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Vinicius Henrique da Silva ▴ 40

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1.4k

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diffhic hic interactionset contactmatrix inflate

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by hwick1 ▴ 20

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1.6k

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diffhic interactionset

8.4 years ago Vivek.b ▴ 100

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1.2k

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InteractionSet structural variants

updated 8.4 years ago by Aaron Lun ★ 28k • written 8.4 years ago by tangming2005 ▴ 200

12 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

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Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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