Bioconductor Interactionset

Showing : interactionset • reset

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DEGcomparison DESeq2 InteractionSet pvalue

9 months ago • updated 8 months ago paria.alipour • 0

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954

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InteractionSet GInteractions

10 months ago Sarah ▴ 10

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647

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InteractionSet subsetByOverlaps GenomicInteractions

16 months ago LaureTomas ▴ 10

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1.0k

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InteractionSet BuildReport

22 months ago martin.grigorov ▴ 10

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InteractionSet

3.4 years ago noag • 0

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1.1k

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S4 Rcpp InteractionSet IRanges Rle

updated 4.4 years ago by Aaron Lun ★ 28k • written 4.4 years ago by lklei001 • 0

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1.0k

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diffHic HiC InteractionSet

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by girardot • 0

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1.4k

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genomicinteractions gviz interactionset

updated 6.0 years ago by liz.ingsimmons ▴ 140 • written 6.0 years ago by ferbecneu • 0

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1.5k

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interactionset granges

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Vinicius Henrique da Silva ▴ 40

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1.4k

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diffhic hic interactionset contactmatrix inflate

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by hwick1 ▴ 20

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1.6k

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diffhic interactionset

8.3 years ago Vivek.b ▴ 100

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1.2k

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InteractionSet structural variants

updated 8.3 years ago by Aaron Lun ★ 28k • written 8.3 years ago by tangming2005 ▴ 200

12 results • Page 1 of 1

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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by rcreed • 0

The updated version worked well on my data. Thank you!

Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k

The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Votes

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

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Scholar to Haibo Liu ▴ 20