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hic
•
reset
0
votes
2
replies
331
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Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 6 months ago by
IsMM
• 0
0
votes
0
replies
857
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
24 months ago
xubeisi
• 0
0
votes
0
replies
853
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.6 years ago
Ankit
▴ 20
0
votes
3
replies
866
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.1 years ago by
merve.sahn
• 0 • written 3.6 years ago by
mtS
• 0
0
votes
0
replies
573
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.6 years ago
changxu.fan
▴ 20
1
vote
7
replies
1.6k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.8 years ago by
Aaron Lun
★ 28k • written 3.8 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
870
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.1 years ago by
Aaron Lun
★ 28k • written 4.1 years ago by
girardot
• 0
0
votes
1
reply
887
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.7 years ago by
Kevin Blighe
★ 3.9k • written 4.7 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.6k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.4 years ago by
bioparticles.melly
• 0 • written 5.4 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
mictadlo
▴ 10
0
votes
1
reply
928
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.5 years ago
mictadlo
▴ 10
1
vote
1
reply
1.4k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
gryderart
• 0
2
votes
1
reply
1.2k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
hwick1
▴ 20
0
votes
8
replies
1.6k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.6 years ago by
Aaron Lun
★ 28k • written 6.6 years ago by
hwick1
▴ 20
2
votes
2
replies
1.5k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.9 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.7k
views
GOTHiC hg19 error
GOTHiC
hic
8.7 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.5k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.8 years ago
Bogdan
▴ 670
17 results • Page
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Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Answer: GESA with certain gene list returns no result with human genom, but many result
by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
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Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
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