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infrastructure
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News:
Single Package Builder / New Package Submission
new package
build machines
infrastructure
News
4.1 years ago
shepherl
3.9k
1
vote
3
replies
2.7k
views
deseq2 DESeqDataSet size when saved
deseq2
infrastructure
deseqdataset
importing
updated 5.8 years ago by
Michael Love
42k • written 5.8 years ago by
eric.blanc
• 0
4
votes
1
reply
2.6k
views
News:
Bioconductor git transition BETA phase starts now.
git
svn
infrastructure
bioconductor
News
7.0 years ago
nitesh.turaga
▴ 140
0
votes
1
reply
840
views
The bioconductor.org main website will be down for a brief period for maintenance. Starting approximately 7:45 am EST. Should be back up around 8:00 …
infrastructure
7.5 years ago
gregory.wargula
▴ 30
0
votes
7
replies
2.3k
views
Bioconductor 2.6 is released
Sequencing
Microarray
Visualization
Infrastructure
PROcess
beadarray
keggorthology
eisa
updated 7.9 years ago by
wangyizhusss
• 0 • written 14.2 years ago by
Patrick Aboyoun
★ 1.6k
1
vote
0
replies
1.6k
views
News:
BioCAsia, 4th November 2016, Brisbane, Australia
conference
transcription
epigenomics
visualization
infrastructure
News
8.0 years ago
Matthew Ritchie
▴ 1000
3
votes
0
replies
1.8k
views
News:
BioCAsia, 8 Sept 2015, Tokyo
sequencing
transcription
epigenomics
visualization
infrastructure
News
9.1 years ago • updated 8.9 years ago
Matthew Ritchie
▴ 1000
0
votes
5
replies
3.5k
views
Running the GSEA algorithm
Infrastructure
PGSEA
GSEABase
SeqGSEA
Infrastructure
PGSEA
GSEABase
SeqGSEA
updated 10.3 years ago by
Julian Gehring
★ 1.3k • written 10.3 years ago by
enricoferrero
▴ 660
0
votes
0
replies
1.9k
views
job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics
Infrastructure
Epigenetics
Infrastructure
10.5 years ago
Holger Klein
▴ 20
0
votes
0
replies
1.4k
views
Bioinformatics Facility Director Position at UC Riverside
Proteomics
Infrastructure
Proteomics
Infrastructure
10.8 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.2k
views
Reopening of Computational Biologist position at Genentech
Infrastructure
PROcess
Infrastructure
PROcess
10.9 years ago
Michael Lawrence
★ 11k
0
votes
2
replies
1.1k
views
*Ranges paper published
Infrastructure
IRanges
GenomicFeatures
GenomicRanges
Infrastructure
IRanges
GenomicFeatures
updated 10.9 years ago by
Tim Triche
★ 4.2k • written 10.9 years ago by
Michael Lawrence
★ 11k
0
votes
4
replies
1.8k
views
DexSeq extracols option
RNASeq
Microarray
Genetics
Annotation
Normalization
Infrastructure
Cancer
probe
limma
updated 10.9 years ago by
Alejandro Reyes
★ 1.9k • written 10.9 years ago by
Ioannis Vlachos
▴ 40
0
votes
1
reply
1.0k
views
convert IDs in a data frame?
GO
Infrastructure
Cancer
GO
Infrastructure
Cancer
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.0 years ago by
Hervé Pagès
16k
0
votes
5
replies
4.8k
views
Finding mismatches between reads and reference sequence
Infrastructure
Cancer
BSgenome
BSgenome
Infrastructure
Cancer
BSgenome
BSgenome
updated 11.3 years ago by
David Greber
▴ 30 • written 11.3 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.7k
views
Bioconductor Digest, Vol 121, Issue 29
miRNA
Annotation
Normalization
Visualization
Clustering
Infrastructure
Cancer
BSgenome
vsn
11.3 years ago
Matthew Thornton
▴ 370
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.3 years ago by
Martin Morgan
25k • written 11.3 years ago by
Shields, Rusty IMS
▴ 40
0
votes
0
replies
1.3k
views
Job: Bioinformatician (postdoc, indefinite) Pirbright Institute
Infrastructure
Infrastructure
11.3 years ago
Jan T Kim
▴ 50
0
votes
10
replies
2.5k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray
Annotation
GO
Network
Regression
Survival
Infrastructure
Escherichia coli
ROC
11.3 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.6k
views
GSEABase error parsing msigdb_v3.1.xml
GO
Infrastructure
hgu95av2
Biobase
annotate
graph
Category
AnnotationDbi
BiocGenerics
GO
updated 11.4 years ago by
Martin Morgan
25k • written 11.4 years ago by
Lina Hultin-Rosenberg
▴ 80
0
votes
0
replies
1.3k
views
Open computational biologist position at Genentech
Infrastructure
Infrastructure
11.5 years ago
Michael Lawrence
★ 11k
0
votes
0
replies
1.2k
views
Bioinformatics Position Opening
Proteomics
Infrastructure
Proteomics
Infrastructure
11.5 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.7k
views
Bioinformatician Job at Pirbright Institute
Genetics
Infrastructure
Genetics
Infrastructure
11.6 years ago
Jan T Kim
▴ 50
0
votes
5
replies
1.1k
views
pooling for parallel hierarchical operations
Infrastructure
Infrastructure
updated 11.6 years ago by
Martin Morgan
25k • written 11.6 years ago by
Michael Lawrence
★ 11k
0
votes
2
replies
2.5k
views
counting RNA-seq reads in R/BioC
GO
Infrastructure
Rsubread
easyRNASeq
GO
Infrastructure
Rsubread
easyRNASeq
updated 11.8 years ago by
Valerie Obenchain
★ 6.8k • written 11.8 years ago by
Mark Robinson
▴ 880
0
votes
8
replies
2.0k
views
good news and bad news
Infrastructure
Cancer
IRanges
GenomicRanges
Infrastructure
Cancer
IRanges
GenomicRanges
updated 11.9 years ago by
Steve Lianoglou
★ 13k • written 11.9 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.5k
views
Bioinformatics Academic Coordinator Job Posting
Proteomics
Infrastructure
Proteomics
Infrastructure
12.0 years ago
Guest User
★ 13k
0
votes
0
replies
961
views
2012 Bioconductor European Developers' Workshop - annoucement
Proteomics
Infrastructure
Proteomics
Infrastructure
12.1 years ago
Mark Robinson
▴ 880
0
votes
0
replies
1.2k
views
Open Position - Academic Coordinator for Bioinformatics
Proteomics
Infrastructure
Proteomics
Infrastructure
12.2 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.2k
views
2 more Job Announcements
Genetics
Infrastructure
Genetics
Infrastructure
12.3 years ago
Jenny Drnevich
★ 2.0k
0
votes
0
replies
1.3k
views
[Job] Bioinformatician-NGS (Vienna, Austria)
Sequencing
Infrastructure
Sequencing
Infrastructure
12.6 years ago
Ido M. Tamir
▴ 150
0
votes
2
replies
1.0k
views
"internal equal" overlap mode for GRangesList
Infrastructure
Infrastructure
updated 12.7 years ago by
Malcolm Cook
★ 1.6k • written 12.7 years ago by
Michael Lawrence
★ 11k
0
votes
0
replies
1.5k
views
illuminaHumanv4 mappings
Infrastructure
Cancer
Homo sapiens
probe
AnnotationDbi
ASSIGN
Infrastructure
Cancer
probe
12.8 years ago
Mark Cowley
▴ 910
0
votes
2
replies
1.5k
views
GGtools and GGBase installation problems
Infrastructure
GUI
Ruuid
GGtools
GGBase
Infrastructure
GUI
Ruuid
GGtools
GGBase
updated 13.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.4 years ago by
Neel Aluru
▴ 460
0
votes
5
replies
1.4k
views
A code kata: evening-out *Ranges ends.
Infrastructure
Cancer
IRanges
Infrastructure
Cancer
IRanges
13.9 years ago
Steve Lianoglou
★ 13k
0
votes
0
replies
835
views
NOTE: bioconductor.org system maintenance; planned downtime 12pm-1pm PDT Friday 9/18
Infrastructure
Infrastructure
14.8 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
994
views
Research positions available in neuroproteomics
Proteomics
Infrastructure
Proteomics
Infrastructure
15.3 years ago
Abhilash Venu
▴ 340
0
votes
0
replies
1.4k
views
GSEA to discover co-regulated genes
Transcription
Annotation
Pathways
Infrastructure
probe
convert
GSEABase
Transcription
15.4 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
877
views
Project Enquiry!
Infrastructure
Infrastructure
15.9 years ago
Kat
▴ 20
0
votes
0
replies
932
views
Staff Position at EBI: Computational Scientist / Bioconductor
Infrastructure
Infrastructure
15.9 years ago
Wolfgang Huber
★ 13k
0
votes
1
reply
1.4k
views
GSEABase error in parsing msigdb_v2.5.xml
GO
Infrastructure
hgu95av2
Biobase
Ruuid
AnnotationDbi
GO
Infrastructure
hgu95av2
Biobase
updated 16.2 years ago by
Martin Morgan
25k • written 16.2 years ago by
Vladimir Morozov
▴ 130
1
vote
4
replies
4.8k
views
Affymetrix Human Gene 1.0 ST Array
Infrastructure
cdf
probe
affy
Infrastructure
cdf
probe
affy
16.2 years ago
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.3k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 16.2 years ago by
Patrick Aboyoun
★ 1.6k • written 16.2 years ago by
Martin Morgan
25k
0
votes
0
replies
873
views
To biomaRt users: Major downtime March 7th 4pm - March 8th 6pm
Infrastructure
biomaRt
Infrastructure
biomaRt
16.3 years ago
Steffen
▴ 500
0
votes
0
replies
1.2k
views
biocep project - R for the Web and the Virtual R Workbench
Infrastructure
PROcess
Infrastructure
PROcess
16.6 years ago
kchine@ebi.ac.uk
▴ 10
0
votes
0
replies
637
views
question regarding lumiHumanV1SUMFUNC and lumiRatV1SUMFUNC in lumiHumanV1 and lumiRatV1, respectively
Annotation
Infrastructure
Cancer
Annotation
Infrastructure
Cancer
16.9 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
1.1k
views
2x2 factorial with dye effect, limma design
Microarray
Infrastructure
Microarray
Infrastructure
17.5 years ago
Gordon Smyth
51k
0
votes
0
replies
1.3k
views
BioC 1.9 is released!
BiocViews
SNP
Microarray
Annotation
Normalization
Visualization
Network
Infrastructure
SNP
17.8 years ago
Seth Falcon
★ 7.4k
0
votes
1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival
Infrastructure
Cancer
hexbin
prada
rfcdmin
rflowcyt
Survival
Infrastructure
updated 18.1 years ago by
Seth Falcon
★ 7.4k • written 18.1 years ago by
Ulrik Stervbo
▴ 80
0
votes
5
replies
1.7k
views
extracting interactions between members of the KEGG pathways
Pathways
Infrastructure
Cancer
graph
Pathways
Infrastructure
Cancer
graph
updated 18.3 years ago by
rgentleman
★ 5.5k • written 18.3 years ago by
Jane Fridlyand
▴ 90
50 results • Page
1 of 1
Recent ...
Replies
Comment: limma comparison for small sample size and how to get covariance matrix
by
Gordon Smyth
51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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