Bioconductor Index

Showing : index • reset

0

votes

1

reply

45

views

genomes bowtiew Index

updated 4 hours ago by James W. MacDonald 67k • written 22 hours ago by eduardo.pastor • 0

0

votes

1

reply

3.5k

views

Genome bwamem ChIPSeqData index

updated 23 months ago by ATpoint ★ 4.6k • written 23 months ago by Maka • 0

0

votes

0

replies

1.7k

views

software NIH index News

10.3 years ago Sean Davis 21k

3 results • Page 1 of 1

Recent ...

Replies

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Awards • All

Popular Question to bastien_chassagnol • 0