Bioconductor Indel

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1.4k

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PureCN indel somatic germline

updated 7.6 years ago by markus.riester ▴ 130 • written 7.6 years ago by pathkim • 0

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1.2k

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snv granges genomicranges variantannotation indel

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by addyS • 0

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1.1k

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pairwisealignment indel

updated 8.5 years ago by Hervé Pagès 16k • written 8.5 years ago by oliwindram ▴ 10

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2.1k

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indel customprodb fasta variantannotation

updated 9.5 years ago by xiaojing.wang ▴ 50 • written 9.5 years ago by kristenbeck527 • 0

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1.5k

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indel sequencing alignment

9.7 years ago Merienne Nicolas ▴ 120

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1.4k

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rnaseq subjunc indel

updated 10.1 years ago by Wei Shi ★ 3.6k • written 10.1 years ago by daniel.silvestre ▴ 100

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3.5k

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bam indel genomicalignments biostrings

updated 10.1 years ago by Nathaniel Hayden ▴ 180 • written 10.1 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: minfi latest update for EPIC V2 chip by macdonaldfrench7286566 • 0

Yes, the most updated analysis for the EPIC V2 chip using the minfi package still involves using the annotations provided by jokergoo. *Th…

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

To compute CPM values from edgeR: ``` y <- DGEList(counts = counts, samples = samples, genes = genes, group = samples$Disease_status) y <- …

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Gordon Smyth 52k

Follow the vignette. It explains how to call edgeR's cpm function to use the offsets.

Comment: edgeR + tximport: calcNormFactors and the usage of offsets by Andre • 0

But if i want to do another type of analysis like Wilcoxon/Mann-Whitney and want to incorporate salmon offset can i simply use the cpm func…

Comment: DESeq error: counts matrix should be numeric, currently it has mode: character by Kucsera • 0

After applying your suggestion, the following error pops up: ``` Error in mde(x) : 'list' object cannot be coerced to type 'double' ```

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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