Bioconductor Indel

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PureCN indel somatic germline

updated 7.8 years ago by markus.riester ▴ 130 • written 7.8 years ago by pathkim • 0

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1.3k

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snv granges genomicranges variantannotation indel

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by addyS • 0

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1.1k

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pairwisealignment indel

updated 8.7 years ago by Hervé Pagès 16k • written 8.8 years ago by oliwindram ▴ 10

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2.2k

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indel customprodb fasta variantannotation

updated 9.7 years ago by xiaojing.wang ▴ 50 • written 9.7 years ago by kristenbeck527 • 0

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1.5k

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indel sequencing alignment

9.9 years ago Merienne Nicolas ▴ 120

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rnaseq subjunc indel

updated 10.4 years ago by Wei Shi ★ 3.6k • written 10.4 years ago by daniel.silvestre ▴ 100

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3.8k

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bam indel genomicalignments biostrings

updated 10.4 years ago by Nathaniel Hayden ▴ 180 • written 10.4 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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