Bioconductor Indel

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1.4k

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PureCN indel somatic germline

updated 7.7 years ago by markus.riester ▴ 130 • written 7.7 years ago by pathkim • 0

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1.3k

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snv granges genomicranges variantannotation indel

updated 8.5 years ago by Michael Lawrence ★ 11k • written 8.5 years ago by addyS • 0

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1.1k

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pairwisealignment indel

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by oliwindram ▴ 10

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2.2k

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indel customprodb fasta variantannotation

updated 9.7 years ago by xiaojing.wang ▴ 50 • written 9.7 years ago by kristenbeck527 • 0

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1.5k

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indel sequencing alignment

9.8 years ago Merienne Nicolas ▴ 120

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1.4k

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rnaseq subjunc indel

updated 10.3 years ago by Wei Shi ★ 3.6k • written 10.3 years ago by daniel.silvestre ▴ 100

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3.7k

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bam indel genomicalignments biostrings

updated 10.3 years ago by Nathaniel Hayden ▴ 180 • written 10.3 years ago by Stefanie Tauber ▴ 40

7 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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