Bioconductor Indel

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PureCN indel somatic germline

updated 7.9 years ago by markus.riester ▴ 130 • written 7.9 years ago by pathkim • 0

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snv granges genomicranges variantannotation indel

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by addyS • 0

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pairwisealignment indel

updated 8.8 years ago by Hervé Pagès 16k • written 8.8 years ago by oliwindram ▴ 10

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indel customprodb fasta variantannotation

updated 9.8 years ago by xiaojing.wang ▴ 50 • written 9.8 years ago by kristenbeck527 • 0

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indel sequencing alignment

10.0 years ago Merienne Nicolas ▴ 120

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rnaseq subjunc indel

updated 10.4 years ago by Wei Shi ★ 3.6k • written 10.5 years ago by daniel.silvestre ▴ 100

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bam indel genomicalignments biostrings

updated 10.5 years ago by Nathaniel Hayden ▴ 180 • written 10.5 years ago by Stefanie Tauber ▴ 40

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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Comment: DESeq2 Design controlling for gender by donnycrimson • 0

On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…

Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0

Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …

Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0

There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…

Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

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remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

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Autobiographer to Paul Harrison ▴ 100

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