Showing : import • reset
4
votes
5
replies
2.4k
views
time course microarray data ArrayExpress database
R GillespieColin ArrayExpress import TimeSeriesExperiment
updated 16 months ago by ▴ 40 • written 2.3 years ago by ▴ 20
0
votes
1
reply
915
views
Import and Analyze 4 GSE12050_GSM304448.gpr microarrays files
.gpr raw Agilent MicroarrayData import
updated 3.2 years ago by 52k • written 3.2 years ago by • 0
0
votes
2
replies
1.7k
views
Error: $ operator is invalid for atomic vectors
import
3.6 years ago Ofelia • 0
0
votes
5
replies
2.2k
views
rtracklayer::import() BigWig issue on windows (solved)
software error BigWig import windows
4.8 years ago lsilva.m • 0
1
vote
2
replies
997
views
Support for import of custom matrix data in the ddCt R package
ddCt import analysis R qRTPCR
updated 5.4 years ago by ▴ 120 • written 5.4 years ago by ▴ 10
3
votes
3
replies
1.7k
views
Bug in rtracklayer::import of amino acid fasta sequences
rtracklayer fasta import Biostrings
updated 6.0 years ago by ★ 11k • written 6.0 years ago by ▴ 120
3
votes
15
replies
3.5k
views
(Big)wig file of complete chromosome
bigwig rtracklayer import granges grangeslist
updated 7.5 years ago by ★ 11k • written 7.5 years ago by ★ 1.5k
3
votes
2
replies
1.3k
views
Import gff from character?
rtracklayer gff gtf import import.gff3
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
2
votes
1
reply
1.3k
views
Strange first_time object in rtracklayer import
rtracklayer bigwig import
updated 8.2 years ago by ★ 11k • written 8.2 years ago by ▴ 10
2
votes
3
replies
2.7k
views
import.bed fails on bed file with no scores
rtracklayer import bed files
8.8 years ago jmr • 0
1
vote
4
replies
3.0k
views
rtracklayer::import()-ing .bed.gz files from a URL
rtracklayer import bed
updated 8.9 years ago by ★ 11k • written 8.9 years ago by ▴ 750
11 results • Page 1 of 1
Recent ...
Replies
Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
Awards • All
Popular Question to shepherl 4.1k
Popular Question to simon.andrews • 0
Popular Question to Gordon Smyth 52k
Popular Question to ajglajd gajgflkadfj gl • 0
Popular Question to Robert Castelo ★ 3.4k
Locations • All
United States, 1 hour ago
Canada, 2 hours ago
San Diego, 2 hours ago
United States, 2 hours ago
EMBL Heidelberg, 3 hours ago
Traffic: 666 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6