Bioconductor Import

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 17 months ago by jacorvar ▴ 40 • written 2.4 years ago by eraldagjika ▴ 20

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957

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.gpr raw Agilent MicroarrayData import

updated 3.3 years ago by Gordon Smyth 52k • written 3.3 years ago by irina.st.louis4 • 0

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1.8k

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import

3.7 years ago Ofelia • 0

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2.2k

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software error BigWig import windows

4.9 years ago lsilva.m • 0

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1.0k

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ddCt import analysis R qRTPCR

updated 5.5 years ago by Zhang, Jitao David ▴ 120 • written 5.5 years ago by mohammedtoufiq91 ▴ 10

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1.7k

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rtracklayer fasta import Biostrings

updated 6.1 years ago by Michael Lawrence ★ 11k • written 6.1 years ago by k.vitting.seerup ▴ 120

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3.6k

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bigwig rtracklayer import granges grangeslist

updated 7.6 years ago by Michael Lawrence ★ 11k • written 7.6 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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rtracklayer gff gtf import import.gff3

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by Marlin ▴ 20

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1.4k

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rtracklayer bigwig import

updated 8.3 years ago by Michael Lawrence ★ 11k • written 8.3 years ago by zx8754 ▴ 10

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2.8k

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rtracklayer import bed files

8.9 years ago jmr • 0

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3.1k

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rtracklayer import bed

updated 8.9 years ago by Michael Lawrence ★ 11k • written 8.9 years ago by Peter Hickey ▴ 750

11 results • Page 1 of 1

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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…

Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k