Bioconductor Illumina450k

Showing : illumina450k • reset

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microarray minfi methylumi illumina450k

8.3 years ago • updated 7.4 years ago poojitha.stemcell ▴ 10

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1.7k

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minfi illumina illumina450k methylation R

7.6 years ago ezrabekele17 • 0

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1.9k

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champ methylation illuminahumanmethylation450k.db illumina450k

updated 8.3 years ago by Yuan Tian ▴ 90 • written 8.3 years ago by hrishi27n ▴ 20

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2.2k

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limma illumina450k lmfit

updated 8.3 years ago by Ryan C. Thompson ★ 7.9k • written 8.3 years ago by DSP • 0

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1.2k

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minfi methylation illumina450k

8.3 years ago hrishi27n ▴ 20

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2.6k

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minfi illumina450k methylation

8.3 years ago hrishi27n ▴ 20

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2.3k

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ENmix combat.mc illumina450k combat sva

8.7 years ago DSP • 0

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1.3k

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minfi bumphunter DNA methylation illumina450k

updated 8.7 years ago by James W. MacDonald 68k • written 8.7 years ago by fleur_p90 • 0

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ChAMP methylation illumina450k

8.8 years ago Daniel E. Weeks ▴ 30

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946

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illumina450k methylation

8.8 years ago niutster • 0

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3.6k

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illumina450k limma lme4 lmer

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by DSP • 0

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1.7k

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minfi software error methylation illumina450k

updated 21 months ago by kuzn.di • 0 • written 9.2 years ago by pm2015 • 0

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1.3k

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minfi software error methylation illumina450k

9.2 years ago pm2015 • 0

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rnbeads illumina450k

updated 9.4 years ago by pavlo.lutsik ▴ 10 • written 9.4 years ago by Brian Smith ▴ 120

14 results • Page 1 of 1

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Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Votes

A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

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