Showing : igraph • reset
1
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2
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488
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
5 months ago • updated 4 months ago Arindam ▴ 80
0
votes
1
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869
views
GRanges list convert into igraph format
GRanges igraph
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 670
0
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0
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705
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coexpression networks
WGCNA igraph
2.3 years ago María José • 0
0
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0
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1.4k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
4.1 years ago Chantel • 0
0
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2
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3.4k
views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
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1
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1.9k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.6 years ago by 52k • written 5.9 years ago by • 0
0
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2
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1.6k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
5.9 years ago Samuel Lee • 0
2
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5
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2.0k
views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 6.0 years ago by ★ 28k • written 6.0 years ago by ▴ 60
0
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1
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1.1k
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
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0
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1.2k
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igraph PoTRA error
graph pathways igraph
7.0 years ago genomic8328 ▴ 10
0
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2
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3.8k
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get vertex xy coords from igraph mst plot
igraph
7.4 years ago Andrew Box ▴ 10
1
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1
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1.7k
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QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
7.6 years ago lljotall ▴ 10
0
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2
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2.2k
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Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 7.7 years ago by • 0 • written 9.2 years ago by • 0
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0
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1.8k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
8.1 years ago jan.soderman • 0
0
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0
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1.2k
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
8.8 years ago Abhishek Pratap ▴ 190
2
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2
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1.4k
views
taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.8 years ago by ▴ 470 • written 8.8 years ago by ▴ 40
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0
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1.3k
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read tree fails for large trees
RamiGO R gene ontology igraph
9.1 years ago bkellman • 0
2
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4
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3.0k
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getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 40
0
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1
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2.1k
views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.3 years ago by • 0 • written 9.3 years ago by ▴ 10
0
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4
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2.3k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.6 years ago by ▴ 20 • written 9.6 years ago by ▴ 130
20 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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