Showing : igraph • reset
1
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448
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
4 months ago • updated 3 months ago Arindam ▴ 80
0
votes
1
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836
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GRanges list convert into igraph format
GRanges igraph
updated 2.0 years ago by ▴ 760 • written 2.0 years ago by ▴ 670
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0
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690
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coexpression networks
WGCNA igraph
2.2 years ago María José • 0
0
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0
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1.4k
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Co-occurrence Network Analysis between Algae and Bacteria
igraph networkanalysis Phylogenetics phyloseq
4.1 years ago Chantel • 0
0
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2
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3.3k
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Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update Phyloseq igraph phangorn Tutorial
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
0
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1
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1.9k
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igraph clustering for gene coexpression network
igraph network gene corexpression rna-seq
updated 3.5 years ago by 52k • written 5.8 years ago by • 0
0
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2
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1.6k
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STRING_id mismatch with STRINGdb
STRINGdb igraph
5.8 years ago Samuel Lee • 0
2
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5
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1.9k
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Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 60
0
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1
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1.1k
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igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph miR2Pathway Pathway page_rank
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
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0
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1.2k
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igraph PoTRA error
graph pathways igraph
6.9 years ago genomic8328 ▴ 10
0
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2
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3.7k
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get vertex xy coords from igraph mst plot
igraph
7.3 years ago Andrew Box ▴ 10
1
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1
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1.6k
views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN igraph
7.5 years ago lljotall ▴ 10
0
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2
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2.2k
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Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph spade
updated 7.7 years ago by • 0 • written 9.1 years ago by • 0
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0
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1.8k
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failed ToPASeq / igraph installation: file present, but not found
installation package installation topaseq igraph LD_LIBRARY_PATH
8.0 years ago jan.soderman • 0
0
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0
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1.1k
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project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi network analysis igraph
8.7 years ago Abhishek Pratap ▴ 190
2
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2
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1.4k
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taking intersection between 6 networks by graph.intersect
igraph software error adjacency matrix
updated 8.7 years ago by ▴ 470 • written 8.7 years ago by ▴ 40
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0
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1.3k
views
read tree fails for large trees
RamiGO R gene ontology igraph
9.0 years ago bkellman • 0
2
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4
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3.0k
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getting a directed and unweighted adjacency matrix with igraph package
igraph
updated 9.1 years ago by 16k • written 9.1 years ago by ▴ 40
0
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1
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2.1k
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Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM igraph
updated 9.2 years ago by • 0 • written 9.2 years ago by ▴ 10
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4
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2.3k
views
Package "geNetClassifier": is this an "igraph' error?
software error geNet igraph genetclassifier
updated 9.5 years ago by ▴ 20 • written 9.5 years ago by ▴ 130
20 results • Page 1 of 1
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Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile by yf • 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Votes
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
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