Showing : hu6800 • reset
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.9 years ago by ▴ 110 • written 12.8 years ago by ▴ 760
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How does one deal with spatial effects detected on single channel microarrays?
Microarray Normalization hu6800 affy gcrma marray nnNorm Harshlight Microarray hu6800
11.3 years ago Scott Robinson ▴ 130
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Affy normalization and filtering method
Normalization Leukemia Lung hu6800 affy Normalization Leukemia Lung hu6800 affy
13.9 years ago Juliet Hannah ▴ 360
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1.9k
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Help with GSEA package
hu6800 cdf genefilter multtest affy gcrma siggenes annaffy GSEABase hu6800 cdf multtest
updated 14.2 years ago by 25k • written 14.2 years ago by ▴ 20
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build a chromLocation object for SNP locations, not genes
SNP hu6800 SNP hu6800
15.6 years ago Paul Shannon ★ 1.1k
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error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.8 years ago by ▴ 70 • written 18.8 years ago by ★ 2.2k
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927
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Error mas5calls(AffyBatchData) for Hu6800 arrays, - help,
hu6800 probe hu6800 probe
updated 19.1 years ago by ▴ 830 • written 19.1 years ago by ▴ 360
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UPDATE: a problem with Metadat package: hgu133a2 ----- Fwd: RE: Should BE964473 be mapped to Hs. 333958 or Hs. 282260?
Annotation GO Cancer hgu95av2 hu6800 probe annotate affy graph RBGL GOstats Annotation
19.3 years ago Shi, Tao ▴ 720
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Fw: duplicate genes in Affy arrays
hu6800 probe affy hu6800 probe affy
19.5 years ago Suresh Gopalan ▴ 60
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1.0k
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duplicate genes in Affy arrays
hu6800 probe hu6800 probe
updated 19.5 years ago by ▴ 60 • written 19.5 years ago by ▴ 30
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975
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common genes between hgu133a and hu6800
Microarray hgu133a hu6800 Microarray hgu133a hu6800
updated 19.6 years ago by ▴ 420 • written 19.6 years ago by ▴ 360
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Detection call for Hu6800
hu6800 probe simpleaffy hu6800 probe simpleaffy
updated 19.9 years ago by ▴ 270 • written 19.9 years ago by ▴ 280
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Detection call for Hu6800
hu6800 probe hu6800 probe
19.9 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
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2
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broken links to metadata
hu6800 hu6800
updated 20.0 years ago by ★ 7.4k • written 20.0 years ago by ▴ 30
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3
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Converting annotate lists to a matrix
Annotation hu6800 convert Annotation hu6800 convert
20.0 years ago michael watson IAH-C ★ 3.4k
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922
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hu6800 Data package
Annotation hu6800 Annotation hu6800
updated 20.1 years ago by ★ 2.9k • written 20.1 years ago by ▴ 10
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hu6800 annotation package amd mgu74cdf package
Annotation hu6800 cdf Annotation hu6800 cdf
updated 20.1 years ago by 68k • written 20.1 years ago by ▴ 60
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Affy mas5calls on Hu6800 arrays
Cancer hu6800 probe affy Category Cancer hu6800 probe affy Category
20.3 years ago Stronach, Euan A ▴ 20
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1.9k
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Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE GO Kidney hgu95av2 hu6800 rae230a cdf Biobase Ruuid DynDoc annotate edd multtest
updated 20.3 years ago by ★ 5.5k • written 20.3 years ago by ▴ 100
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3
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equivalent probes between microarray platforms
hgu133plus2 hu6800 hgu133plus2 hu6800
updated 20.3 years ago by ▴ 10 • written 20.3 years ago by ▴ 140
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827
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high poportion of identical expression measure with RMA and 3 arrays
hu6800 affy gcrma hu6800 affy gcrma
20.4 years ago Adaikalavan Ramasamy ★ 1.8k
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916
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Help Regarding Analysis.
Microarray Normalization GO hu6800 rae230a probe affy PROcess Microarray Normalization
updated 20.7 years ago by 68k • written 20.7 years ago by ▴ 10
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Reading CEL file information
hu6800 hu6800
20.8 years ago Vitalina Komashko ▴ 60
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Problems with Hu6800 and GCRMA...
Microarray hu6800 probe gcrma Microarray hu6800 probe gcrma
20.9 years ago Stiles, David NIH/NIDDK ▴ 50
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Problems with Hu6800 and GCRMA
Microarray hu6800 probe gcrma Microarray hu6800 probe gcrma
20.9 years ago Stiles, David NIH/NIDDK ▴ 50
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1
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772
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Hu6800 annotation file
Annotation hu6800 Annotation hu6800
updated 21.1 years ago by 21k • written 21.1 years ago by ▴ 30
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option rm.mask=TRUE in ReadAffy
Normalization Preprocessing hu6800 probe Normalization Preprocessing hu6800 probe
21.3 years ago t-kawai@hhc.eisai.co.jp ▴ 50
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731
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Broken Link
Annotation hu6800 Annotation hu6800
updated 21.6 years ago by ★ 3.9k • written 21.6 years ago by ▴ 10
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1.1k
views
CDF/CEL files
hu6800 cdf hu6800 cdf
updated 21.8 years ago by ★ 2.3k • written 21.8 years ago by ▴ 340
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Re: AFFY package for R, image of cell file turned upside down?
hu6800 affy hu6800 affy
22.4 years ago Laurent Gautier ★ 2.3k
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Re: Data in annotate
hu6800 hu6800
22.5 years ago John Zhang ★ 2.9k
31 results • Page 1 of 1
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Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Comment: Why the order of sample names in the beta matrix affect the analysis results of by 81becky • 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis by Blair • 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
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A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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