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670

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downloads http429 http Bioconductor

9 months ago shepherl 4.1k

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2.5k

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import.bw rtracklayer Windows http

3.4 years ago sla • 0

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5.9k

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import.bw rtracklayer http RStudio

updated 4.4 years ago by Michael Lawrence ★ 11k • written 4.4 years ago by Søren • 0

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1.5k

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genomicdatacommons tcga gdc rest http

updated 6.3 years ago by Sean Davis 21k • written 6.3 years ago by mk ▴ 20

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2.1k

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gviz gviz-package rtracklayer http

7.2 years ago enricoferrero ▴ 680

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3.5k

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arrayexpress xml rcurl http EBI

updated 7.6 years ago by Wolfgang Huber ★ 13k • written 7.6 years ago by Bernd Klaus ▴ 610

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2.3k

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security http source installation

updated 9.9 years ago by Dan Tenenbaum ★ 8.2k • written 9.9 years ago by will.townes • 0

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10