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downloads http429 http Bioconductor

6 months ago shepherl 4.1k

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import.bw rtracklayer Windows http

3.2 years ago sla • 0

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import.bw rtracklayer http RStudio

updated 4.2 years ago by Michael Lawrence ★ 11k • written 4.2 years ago by Søren • 0

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genomicdatacommons tcga gdc rest http

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by mk ▴ 20

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gviz gviz-package rtracklayer http

7.0 years ago enricoferrero ▴ 680

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arrayexpress xml rcurl http EBI

updated 7.3 years ago by Wolfgang Huber ★ 13k • written 7.3 years ago by Bernd Klaus ▴ 610

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security http source installation

updated 9.7 years ago by Dan Tenenbaum ★ 8.2k • written 9.7 years ago by will.townes • 0

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Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

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Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

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