Bioconductor Htseq

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780

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DEXSeq HTSeq R

14 months ago • updated 13 months ago yr542 • 0

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1.2k

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DESeq2 microRNA HTSeq

21 months ago abhay.kanodia • 0

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938

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 22 months ago by Michael Love 42k • written 22 months ago by abhay.kanodia • 0

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891

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DESeq2 htseq DEGseq RNASeq read

updated 23 months ago by Michael Love 42k • written 23 months ago by CP • 0

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1.2k

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software error HTSeq installation

updated 4.6 years ago by Martin Morgan 25k • written 4.6 years ago by eric33150 • 0

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4.7k

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voom htseq edgeR limma RNASeq123

updated 5.7 years ago by Gordon Smyth 51k • written 7.3 years ago by wd ▴ 30

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1.6k

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DEXSeq dexseq_count htseq

7.6 years ago mat.lesche ▴ 110

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2.1k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by sakura.nussbaum ▴ 10

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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Answer: How to control batch effect if Group and batch are same?

Comment: Convert HGVS Representation back to Reference Genome Coordinates

Answer: How to control batch effect if Group and batch are same?

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k