Bioconductor Htseq

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995

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DEXSeq HTSeq R

20 months ago • updated 19 months ago yr542 • 0

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1.4k

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DESeq2 microRNA HTSeq

2.3 years ago abhay.kanodia • 0

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1.1k

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by abhay.kanodia • 0

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1.1k

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DESeq2 htseq DEGseq RNASeq read

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by CP • 0

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1.4k

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software error HTSeq installation

updated 5.1 years ago by Martin Morgan 25k • written 5.1 years ago by eric33150 • 0

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5.0k

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voom htseq edgeR limma RNASeq123

updated 6.2 years ago by Gordon Smyth 52k • written 7.8 years ago by wd ▴ 30

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1.8k

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DEXSeq dexseq_count htseq

8.1 years ago mat.lesche ▴ 110

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2.3k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 9.0 years ago by Martin Morgan 25k • written 9.0 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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