Bioconductor HTseq

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581

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DEXSeq HTSeq R

9 months ago • updated 8 months ago yr542 • 0

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DESeq2 microRNA HTSeq

17 months ago • updated 16 months ago abhay.kanodia • 0

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734

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DESeq2 RNA-seq HTseq DESeqDataSetFromHTSeqCount

updated 17 months ago by Michael Love 42k • written 18 months ago by abhay.kanodia • 0

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728

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DESeq2 htseq DEGseq RNASeq read

updated 18 months ago by Michael Love 42k • written 18 months ago by CP • 0

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1.1k

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software error HTSeq installation

updated 4.2 years ago by Martin Morgan 25k • written 4.2 years ago by eric33150 • 0

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4.5k

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voom htseq edgeR limma RNASeq123

updated 5.4 years ago by Gordon Smyth 50k • written 6.9 years ago by wd ▴ 30

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1.5k

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DEXSeq dexseq_count htseq

7.2 years ago mat.lesche ▴ 90

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1.9k

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HTSeq HTSeqCounts Could not find function DEXSeq

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by sakura.nussbaum ▴ 10

8 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30

Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…

Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0

Thanks a lot!

Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150

Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360

So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!

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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?

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