Showing : homo sapiens • reset
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.1 years ago by 66k • written 6.1 years ago by • 0
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5
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TxDb.Hsapiens.UCSC.hg19.knownGene - Error: subscript contains out-of-bounds indices for some Entrez codes
bioconductor genomicranges homo sapiens
updated 7.4 years ago by 66k • written 7.4 years ago by • 0
3
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5
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Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 9.3 years ago by ★ 7.2k • written 9.3 years ago by ▴ 50
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Weirdness with the human org.Hs.eg.db annotation database
annotationdbi homo sapiens
updated 9.7 years ago by ★ 7.2k • written 9.7 years ago by ▴ 220
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BSgenome
Homo sapiens BSgenome BSgenome Homo sapiens BSgenome BSgenome
updated 10.0 years ago by 66k • written 10.0 years ago by ▴ 290
2
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8
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Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 10.3 years ago by 66k • written 10.3 years ago by ★ 1.1k
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GO-Pathways using RDAVIDWebService
Pathways Homo sapiens RDAVIDWebService Pathways Homo sapiens RDAVIDWebService
updated 10.4 years ago by ▴ 370 • written 10.4 years ago by ▴ 50
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edgeR dispersion value
Homo sapiens Homo sapiens
updated 11.0 years ago by ▴ 880 • written 11.0 years ago by ★ 13k
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getGEO vs GEOmetadb
Lung Homo sapiens Pseudomonas aeruginosa GEOmetadb Lung Homo sapiens Pseudomonas aeruginosa
11.1 years ago Jack Zhu ▴ 170
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3
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2.5k
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DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 11.1 years ago by 42k • written 11.1 years ago by ▴ 150
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DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 11.1 years ago by ★ 3.7k • written 11.1 years ago by ▴ 150
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Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 11.5 years ago by ▴ 20 • written 11.5 years ago by ▴ 40
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 11.5 years ago by ▴ 20 • written 11.5 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
11.5 years ago Guest User ★ 13k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
11.9 years ago Seyed Ahmad Mousavi ▴ 10
2
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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 11.9 years ago by ★ 7.2k • written 12.0 years ago by ▴ 940
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views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
12.4 years ago Bogdan ▴ 670
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1.1k
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custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 12.6 years ago by 16k • written 12.6 years ago by ▴ 100
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
12.8 years ago Mark Cowley ▴ 910
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illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 12.8 years ago by ★ 1.1k • written 12.8 years ago by ▴ 910
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
12.9 years ago Jing Huang ▴ 380
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1.2k
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working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 13.3 years ago by ★ 3.9k • written 13.3 years ago by ★ 1.5k
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Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
14.3 years ago Rhoda Kinsella ▴ 660
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Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 14.4 years ago by ▴ 610 • written 14.4 years ago by ▴ 10
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
14.7 years ago mauede@alice.it ▴ 870
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
14.8 years ago mauede@alice.it ▴ 870
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 14.8 years ago by ▴ 580 • written 14.8 years ago by ▴ 870
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biomaRt vs biomart.org
Homo sapiens biomaRt Homo sapiens biomaRt
14.8 years ago Tefina Paloma ▴ 220
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 14.8 years ago by 66k • written 14.8 years ago by ▴ 340
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Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
15.0 years ago Rhoda Kinsella ▴ 660
0
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984
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Can I use such identifier to interrogate BioMart ?
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.0 years ago mauede@alice.it ▴ 870
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I: Help with symbol names mapping between miRecords and BioMart
GO Homo sapiens biomaRt GO Homo sapiens biomaRt
15.0 years ago mauede@alice.it ▴ 870
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one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart
miRNA Homo sapiens miRNA Homo sapiens
15.0 years ago mauede@alice.it ▴ 870
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1.6k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 15.0 years ago by ★ 3.4k • written 15.0 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
15.0 years ago michael watson IAH-C ★ 3.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 870
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3.7k
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how to get the miRNA, identifier from database Ensembl through biomaRt functions ???
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 870
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R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.0 years ago by ★ 13k • written 15.0 years ago by ▴ 870
0
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.0 years ago michael watson IAH-C ★ 3.4k
0
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1.2k
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.0 years ago mauede@alice.it ▴ 870
0
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2
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1.5k
views
how to find the validated pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens miRNA Homo sapiens
updated 15.0 years ago by 21k • written 15.0 years ago by ▴ 870
0
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1
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2.8k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.1 years ago by 16k • written 15.1 years ago by ▴ 90
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2
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1.2k
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Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.1 years ago JEAN-YVES SGRO ▴ 20
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6.8k
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org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 15.4 years ago by ▴ 10 • written 15.4 years ago by ★ 1.1k
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
15.4 years ago Daren Tan ▴ 190
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Re: maPlot and defining controls
Microarray Homo sapiens Microarray Homo sapiens
20.6 years ago Chris Bye ▴ 30
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1
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930
views
Problems highlight control spots in MA plots
Microarray Homo sapiens Microarray Homo sapiens
updated 20.6 years ago by ▴ 920 • written 20.6 years ago by ▴ 20
47 results • Page 1 of 1
Recent ...
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Comment: limma comparison for small sample size and how to get covariance matrix by Gordon Smyth 51k
Your MDS plot is better than before, but you are still not following the recommendation for making for making such plots given in the limma…
Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot by James W. MacDonald 66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data by Elodie • 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
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Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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