Showing : homo sapiens • reset
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Understand the chromosome name in homo sapiens gene database
homo sapiens chromosome
updated 6.8 years ago by 68k • written 6.8 years ago by • 0
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5
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TxDb.Hsapiens.UCSC.hg19.knownGene - Error: subscript contains out-of-bounds indices for some Entrez codes
bioconductor genomicranges homo sapiens
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
3
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5
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Error selecting Gene Symbol using Entrez ID via Homo.sapiens
homo sapiens
updated 9.9 years ago by ★ 7.2k • written 9.9 years ago by ▴ 50
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Weirdness with the human org.Hs.eg.db annotation database
annotationdbi homo sapiens
updated 10.4 years ago by ★ 7.2k • written 10.4 years ago by ▴ 220
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BSgenome
Homo sapiens BSgenome BSgenome Homo sapiens BSgenome BSgenome
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 290
2
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8
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Genes annotated to GO:0031281 using org.Hs.eg.db
GO Homo sapiens GO Homo sapiens
updated 11.0 years ago by 68k • written 11.0 years ago by ★ 1.1k
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2
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GO-Pathways using RDAVIDWebService
Pathways Homo sapiens RDAVIDWebService Pathways Homo sapiens RDAVIDWebService
updated 11.1 years ago by ▴ 370 • written 11.1 years ago by ▴ 50
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edgeR dispersion value
Homo sapiens Homo sapiens
updated 11.7 years ago by ▴ 880 • written 11.7 years ago by ★ 13k
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getGEO vs GEOmetadb
Lung Homo sapiens Pseudomonas aeruginosa GEOmetadb Lung Homo sapiens Pseudomonas aeruginosa
11.7 years ago Jack Zhu ▴ 170
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2.7k
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DEXSeq Issue
Alignment Annotation GO Homo sapiens TranscriptDb PROcess GenomicFeatures DEXSeq Alignment
updated 11.8 years ago by 43k • written 11.8 years ago by ▴ 150
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DEXSeq Problems
Alignment Homo sapiens PROcess Alignment Homo sapiens PROcess
updated 11.8 years ago by ★ 3.8k • written 11.8 years ago by ▴ 150
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views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by ▴ 40
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Cancer Homo sapiens affy Cancer Homo sapiens affy
updated 12.2 years ago by ▴ 20 • written 12.2 years ago by 25k
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normalise many cel files TCBB-2007-11-0161_noCEL.tar
Homo sapiens affy Homo sapiens affy
12.2 years ago Guest User ★ 13k
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Fwd: ASSIST on contrast matrix
Network Homo sapiens limma PROcess Network Homo sapiens limma PROcess
12.5 years ago Seyed Ahmad Mousavi ▴ 10
2
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1.3k
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How updated is hom.Hs.inp.db? (to get homologous mapping between mouse and human symbol)?
GO Homo sapiens GO Homo sapiens
updated 12.6 years ago by ★ 7.2k • written 12.6 years ago by ▴ 950
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views
bioMart
Homo sapiens biomaRt Homo sapiens biomaRt
13.1 years ago Bogdan ▴ 670
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1.2k
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custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 100
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illuminaHumanv4 mappings
Infrastructure Cancer Homo sapiens probe AnnotationDbi ASSIGN Infrastructure Cancer probe
13.4 years ago Mark Cowley ▴ 910
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1
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1.4k
views
illuminaHumanv4 mappings
Cancer Homo sapiens Cancer Homo sapiens
updated 13.4 years ago by ★ 1.1k • written 13.5 years ago by ▴ 910
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topTable (fit) annotation
Annotation GO Homo sapiens annotate limma GEOquery Annotation GO Homo sapiens annotate
13.5 years ago Jing Huang ▴ 380
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1.3k
views
working with ROOT and the xps problem
miRNA Microarray Annotation Homo sapiens probe xps miRNA Microarray Annotation probe xps
updated 14.0 years ago by ★ 3.9k • written 14.0 years ago by ★ 1.5k
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Ensembl mart release 57: Useful information
SNP GO Homo sapiens zebrafish SNP GO Homo sapiens zebrafish
15.0 years ago Rhoda Kinsella ▴ 660
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1.3k
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Is there anyway to map a set of EST id's to genBank accessions?
Annotation Homo sapiens annotate Annotation Homo sapiens annotate
updated 15.1 years ago by ▴ 610 • written 15.1 years ago by ▴ 10
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R: difference between "hsa-miR-xxx" and "hsa-miR-xxx*"
miRNA Homo sapiens biomaRt microRNA miRNA Homo sapiens biomaRt microRNA
15.4 years ago mauede@alice.it ▴ 870
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R: R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Cancer Homo sapiens biomaRt microRNA Transcription miRNA Cancer
15.4 years ago mauede@alice.it ▴ 870
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R: How can I trace back transcription target genes from the miRNAs file downloadable from miRbase ?
Transcription miRNA Homo sapiens biomaRt Transcription miRNA Homo sapiens biomaRt
updated 15.4 years ago by ▴ 580 • written 15.4 years ago by ▴ 870
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4
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biomaRt vs biomart.org
Homo sapiens biomaRt Homo sapiens biomaRt
15.5 years ago • updated 15.4 years ago Tefina Paloma ▴ 220
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error with "retrain" method of gene2pathway package
Pathways GO Organism Homo sapiens hgu133plus2 gene2pathway Pathways GO Organism
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 340
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views
Ensembl mart release 55: Useful information
Danio rerio Homo sapiens probe Danio rerio Homo sapiens probe
15.6 years ago Rhoda Kinsella ▴ 660
0
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1.1k
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Can I use such identifier to interrogate BioMart ?
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.7 years ago mauede@alice.it ▴ 870
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995
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I: Help with symbol names mapping between miRecords and BioMart
GO Homo sapiens biomaRt GO Homo sapiens biomaRt
15.7 years ago mauede@alice.it ▴ 870
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883
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one more doubt about the (miRNA, gene-3UTR) pairs from Ensembl and BioMart
miRNA Homo sapiens miRNA Homo sapiens
15.7 years ago mauede@alice.it ▴ 870
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1.8k
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R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics Homo sapiens biomaRt PING miRNA Biophysics Homo sapiens biomaRt PING
updated 15.7 years ago by ★ 3.4k • written 15.7 years ago by ▴ 870
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R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
15.7 years ago michael watson IAH-C ★ 3.4k
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1.4k
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R: R: R: R: R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Biophysics GO Homo sapiens Biostrings biomaRt miRNA Biophysics GO Homo sapiens
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 870
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1
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4.2k
views
how to get the miRNA, identifier from database Ensembl through biomaRt functions ???
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 870
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2
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1.4k
views
R: how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 870
0
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0
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1.9k
views
how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.7 years ago michael watson IAH-C ★ 3.4k
0
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1.4k
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how to find the VALIDATED pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens biomaRt miRNA Homo sapiens biomaRt
15.7 years ago mauede@alice.it ▴ 870
0
votes
2
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1.7k
views
how to find the validated pair (miRNA, gene-3'UTR-sequence)
miRNA Homo sapiens miRNA Homo sapiens
updated 15.7 years ago by 21k • written 15.7 years ago by ▴ 870
0
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1
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3.0k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 15.7 years ago by 16k • written 15.7 years ago by ▴ 90
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2
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1.4k
views
Nimblegen / Ringo / Preprocess error: inherits(myRG, "RGList") is not TRUE
Preprocessing Homo sapiens probe Ringo Preprocessing Homo sapiens probe Ringo
15.8 years ago JEAN-YVES SGRO ▴ 20
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3
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7.2k
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org.Hs.eg.db -- Entrez ID to Gene Symbol conversion
Cancer Homo sapiens convert Cancer Homo sapiens convert
updated 16.0 years ago by ▴ 10 • written 16.0 years ago by ★ 1.1k
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1.1k
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Annotation package for Agilent human CGH 44B
Annotation CGH Homo sapiens Annotation CGH Homo sapiens
16.1 years ago Daren Tan ▴ 190
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0
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922
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Re: maPlot and defining controls
Microarray Homo sapiens Microarray Homo sapiens
21.3 years ago Chris Bye ▴ 30
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1
reply
1.1k
views
Problems highlight control spots in MA plots
Microarray Homo sapiens Microarray Homo sapiens
updated 21.3 years ago by ▴ 920 • written 21.3 years ago by ▴ 20
47 results • Page 1 of 1
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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga by Jane • 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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