Bioconductor Hicup

Showing : hicup • reset

0

votes

0

replies

1.1k

views

HOMER HiCUP BAM HiC

3.1 years ago Ankit ▴ 20

0

votes

9

replies

1.8k

views

diffhic gothic hicup hic-c hic

updated 6.1 years ago by Aaron Lun ★ 28k • written 6.1 years ago by mictadlo ▴ 10

0

votes

1

reply

1.1k

views

hic diffhic gothic hicup hic-c

6.1 years ago mictadlo ▴ 10

3

votes

2

replies

2.7k

views

hicup hi-c diffhic homer

7.5 years ago e.jacobson ▴ 10

4 results • Page 1 of 1

Recent ...

Replies

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Answer: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Before you try to use a function, you should read the help page to ensure that you are using the correct argument type. As an example, here…

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu by James W. MacDonald 67k

It's not the version control in R/Bioconductor though. It's the version of the genome. OP used Ensembl build 113 to align and then noted th…

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D by Quang ▴ 10

Also, Michael, when I used SVA in addition, so I have the `design = ~ Date_lysed + SV1 + condition_subset`, do I just set `mat_corrected <-…

Comment: Differential variability modelling with vst() expression by Michael Love 43k

See Gordon's reply below for an implementation you can use directly.

Votes

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Comment: Why did PCA plots look exactly the same after adjusting for batch covariate in D

Awards • All