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hicup
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How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
3.0 years ago
Ankit
▴ 20
0
votes
9
replies
1.7k
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from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.1k
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Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.9 years ago
mictadlo
▴ 10
3
votes
2
replies
2.6k
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Best way to get HiCUP-mapped Hi-C data into diffHiC
hicup
hi-c
diffhic
homer
7.4 years ago • updated 7.3 years ago
e.jacobson
▴ 10
4 results • Page
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Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
josephasmith1310
• 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open!
by
Esperan
• 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
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