Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
hic
•
reset
0
votes
0
replies
364
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
8 months ago
user_bioinfo
• 0
0
votes
2
replies
624
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 17 months ago by
IsMM
• 0
0
votes
0
replies
1.1k
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
2.9 years ago
xubeisi
• 0
0
votes
0
replies
1.2k
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
3.4 years ago
Ankit
▴ 20
0
votes
3
replies
1.1k
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 3.0 years ago by
merve.sahn
• 0 • written 4.5 years ago by
mtS
• 0
0
votes
0
replies
778
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
4.5 years ago
changxu.fan
▴ 20
1
vote
7
replies
2.0k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 4.7 years ago by
Aaron Lun
★ 28k • written 4.7 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
1.2k
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
girardot
• 0
0
votes
1
reply
1.2k
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.9k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 6.3 years ago by
bioparticles.melly
• 0 • written 6.3 years ago by
m.t.lorenc
• 0
0
votes
9
replies
2.0k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
mictadlo
▴ 10
0
votes
1
reply
1.2k
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
6.4 years ago
mictadlo
▴ 10
1
vote
1
reply
1.8k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
gryderart
• 0
2
votes
1
reply
1.5k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
hwick1
▴ 20
0
votes
8
replies
2.1k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 7.5 years ago by
Aaron Lun
★ 28k • written 7.5 years ago by
hwick1
▴ 20
2
votes
2
replies
1.7k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
7.7 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.9k
views
GOTHiC hg19 error
GOTHiC
hic
9.6 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
3.2k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
9.6 years ago
Bogdan
▴ 670
18 results • Page
1 of 1
Recent ...
Replies
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2
by
ATpoint
★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness
by
ATpoint
★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.6k
Popular Question
to
etiennedanis
• 0
Popular Question
to
javier.ruizramirez
• 0
Autobiographer
to
Paul Harrison
▴ 100
Popular Question
to
mohammedtoufiq91
▴ 10
Locations
• All
Denmark,
10 minutes ago
India,
21 minutes ago
India,
48 minutes ago
Lithuania,
59 minutes ago
Switzerland,
1 hour ago
Traffic: 1090 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6