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hic
•
reset
0
votes
2
replies
350
views
Java error while running HiCDC overview code
JuicerTools
HiC
HiCDCPlus
Java
Juicer
written 7 months ago by
IsMM
• 0
0
votes
0
replies
869
views
Job:
Bioinformatics Research Scientist- Epigenetics Group
HiC
Epigenetics
HiCHIP
ChIPSeq
2.1 years ago
xubeisi
• 0
0
votes
0
replies
884
views
How to prepare HiCUP BAM output as input for HOMER?
HOMER
HiCUP
BAM
HiC
2.6 years ago
Ankit
▴ 20
0
votes
3
replies
880
views
HiCDCPlus / HiC-DC+ is not found
HiCDCPlus
HiC-DC+
HiCcompare
HiC
updated 2.2 years ago by
merve.sahn
• 0 • written 3.7 years ago by
mtS
• 0
0
votes
0
replies
582
views
Looking for a package to efficiently plot Hi-C contact maps
HiC
hicrep
HiCcompare
3.7 years ago
changxu.fan
▴ 20
1
vote
7
replies
1.7k
views
problem recasting InteractionSet into a DGEList
diffHic
GenomicInteractions
edgeR
HiC
cooler
updated 3.9 years ago by
Aaron Lun
★ 28k • written 3.9 years ago by
Marco Blanchette
▴ 30
0
votes
1
reply
880
views
How to load counts from existing count matrices in diffHic package
diffHic
HiC
InteractionSet
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
girardot
• 0
0
votes
1
reply
901
views
.cool to .txt cooler2bedpe does not work HiCompare
HiCompare
HiC
cool
updated 4.8 years ago by
Kevin Blighe
★ 3.9k • written 4.8 years ago by
c.chakraborty
• 0
0
votes
3
replies
1.6k
views
extracting scaffoldnames from HiC contact matrix
hic
updated 5.5 years ago by
bioparticles.melly
• 0 • written 5.5 years ago by
m.t.lorenc
• 0
0
votes
9
replies
1.5k
views
from denove contig assembly to chromosome bins
diffhic
gothic
hicup
hic-c
hic
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
mictadlo
▴ 10
0
votes
1
reply
939
views
Error in scanBam(bam_fn) : could not find function "scanBam"
hic
diffhic
gothic
hicup
hic-c
5.6 years ago
mictadlo
▴ 10
1
vote
1
reply
1.4k
views
extract HiC contacts for a given BEDPE set of coordinates
hic
diffhic
chromatin
bedpe
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
gryderart
• 0
2
votes
1
reply
1.3k
views
Inflating interactionSets into a contact matrix
diffhic
hic
interactionset
contactmatrix
inflate
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
hwick1
▴ 20
0
votes
8
replies
1.7k
views
How to get specific fragment/read interactions from HiC (diffHiC) data?
diffhic
hic
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
hwick1
▴ 20
2
votes
2
replies
1.5k
views
Extracting non-interacting hic reads to create a sam/bam file
diffhic
hicpro
hic
6.9 years ago
sergio.espeso-gil
• 0
0
votes
3
replies
1.7k
views
GOTHiC hg19 error
GOTHiC
hic
8.8 years ago
Nathan Sheffield
▴ 10
4
votes
20
replies
2.5k
views
scaling loess curves
HiTC
gothic
diffhic
HiC
8.8 years ago
Bogdan
▴ 670
17 results • Page
1 of 1
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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