Showing : hgug4112a • reset
3
votes
9
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2.8k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
9.2 years ago Konstantinos Yeles ▴ 80
0
votes
0
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
10.6 years ago Guest User ★ 13k
0
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0
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9.5k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.8 years ago Guest User ★ 13k
0
votes
1
reply
1.1k
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 11.5 years ago by 68k • written 11.5 years ago by ▴ 10
0
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0
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1.4k
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
12.0 years ago Daniel Emden ▴ 10
0
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0
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1.2k
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Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
12.8 years ago Yoo, Seungyeul ▴ 110
0
votes
1
reply
951
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 13.6 years ago by ★ 6.8k • written 13.6 years ago by ▴ 90
0
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0
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1.1k
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FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
13.6 years ago Paz Tapia Ramirez ▴ 150
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1
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1.3k
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 14.7 years ago by ▴ 460 • written 14.7 years ago by ▴ 20
0
votes
1
reply
1.0k
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 14.9 years ago by 25k • written 14.9 years ago by ▴ 10
0
votes
2
replies
1.2k
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 15.2 years ago by 68k • written 15.2 years ago by ★ 1.1k
0
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0
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Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
15.2 years ago jason0701 ▴ 190
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0
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974
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
15.3 years ago Pedro Lopez-Romero ▴ 120
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votes
0
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1.5k
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
15.3 years ago Massimo Pinto ▴ 390
0
votes
0
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972
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error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
15.4 years ago Massimo Pinto ▴ 390
0
votes
3
replies
2.1k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 15.4 years ago by ★ 5.5k • written 15.4 years ago by ▴ 390
0
votes
11
replies
2.3k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 390
0
votes
2
replies
9.6k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 15.5 years ago by 68k • written 15.5 years ago by ▴ 390
0
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0
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1.0k
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
15.7 years ago Massimo Pinto ▴ 390
0
votes
1
reply
1.4k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.2 years ago by ★ 7.2k • written 16.2 years ago by ▴ 180
0
votes
0
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1.4k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.2 years ago Paul Evans ▴ 180
0
votes
2
replies
1.9k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 16.4 years ago by ★ 1.3k • written 16.4 years ago by ▴ 190
0
votes
1
reply
1.1k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.0 years ago by 21k • written 17.0 years ago by ▴ 600
0
votes
1
reply
1.1k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 17.0 years ago by ★ 6.0k • written 17.0 years ago by 21k
24 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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