Showing : hgug4112a • reset
3
votes
9
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2.7k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.9 years ago Konstantinos Yeles ▴ 80
0
votes
0
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1.3k
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
10.3 years ago Guest User ★ 13k
0
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0
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9.3k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
10.6 years ago Guest User ★ 13k
0
votes
1
reply
1.0k
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 11.2 years ago by 67k • written 11.2 years ago by ▴ 10
0
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0
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1.4k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.7 years ago Daniel Emden ▴ 10
0
votes
0
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1.2k
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Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
12.6 years ago Yoo, Seungyeul ▴ 110
0
votes
1
reply
912
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 13.3 years ago by ★ 6.8k • written 13.3 years ago by ▴ 90
0
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0
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1.1k
views
FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
13.4 years ago Paz Tapia Ramirez ▴ 150
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1
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1.3k
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Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 14.4 years ago by ▴ 460 • written 14.4 years ago by ▴ 20
0
votes
1
reply
971
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 14.6 years ago by 25k • written 14.6 years ago by ▴ 10
0
votes
2
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1.1k
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 14.9 years ago by 67k • written 14.9 years ago by ★ 1.0k
0
votes
0
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995
views
Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
14.9 years ago jason0701 ▴ 190
0
votes
0
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937
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
15.0 years ago Pedro Lopez-Romero ▴ 120
0
votes
0
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1.5k
views
on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
15.1 years ago Massimo Pinto ▴ 390
0
votes
0
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940
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
15.2 years ago Massimo Pinto ▴ 390
0
votes
3
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2.0k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 15.2 years ago by ★ 5.5k • written 15.2 years ago by ▴ 390
0
votes
11
replies
2.1k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 15.2 years ago by ★ 1.3k • written 15.2 years ago by ▴ 390
0
votes
2
replies
9.5k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 15.2 years ago by 67k • written 15.2 years ago by ▴ 390
0
votes
0
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973
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
15.5 years ago Massimo Pinto ▴ 390
0
votes
1
reply
1.3k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.9 years ago by ★ 7.2k • written 15.9 years ago by ▴ 180
0
votes
0
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1.3k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.0 years ago Paul Evans ▴ 180
0
votes
2
replies
1.9k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 16.2 years ago by ★ 1.3k • written 16.2 years ago by ▴ 190
0
votes
1
reply
1.0k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.8 years ago by 21k • written 16.8 years ago by ▴ 600
0
votes
1
reply
1.0k
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.8 years ago by ★ 6.0k • written 16.8 years ago by 21k
24 results • Page 1 of 1
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
It is not possible to use both. estimateGLMRobustDisp() estimates negative binomial dispersions for each gene, whereas glmQLFit() estimates…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…
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Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…
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pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…
Comment: RnBeads::combine() - error? by Urotree • 0
![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…
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