Showing : hgu133b • reset
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Analyse of HGU133 set / Merge ExpressionSet
affy hgu133a hgu133b
updated 8.8 years ago by 67k • written 8.8 years ago by ▴ 40
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5
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ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 8.8 years ago by ▴ 110 • written 12.7 years ago by ▴ 760
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
12.8 years ago Mayte Suarez-Farinas ▴ 510
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GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 16.0 years ago by ★ 7.2k • written 16.0 years ago by ▴ 180
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GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
16.1 years ago Paul Evans ▴ 180
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A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a hgu133b gcrma hgu133a hgu133b gcrma
18.8 years ago Li, Aiguo NIH/NCI ▴ 110
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cdfName/annotation variants for hgu133a?
Annotation hgu133a hgu133b Annotation hgu133a hgu133b
updated 19.5 years ago by 67k • written 19.5 years ago by ▴ 40
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combining hgu133a hgu133b
hgu133a hgu133b annotate hgu133a hgu133b annotate
updated 20.2 years ago by ★ 1.8k • written 20.2 years ago by ▴ 250
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1.0k
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Plotting together data from hgu133a and b
hgu133a hgu133b geneplotter hgu133a hgu133b geneplotter
updated 20.5 years ago by ★ 5.5k • written 20.5 years ago by ▴ 500
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5
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Combining HGU133A & HGU133B data
hgu133a hgu133b hgu133a hgu133b
updated 21.4 years ago by ★ 1.1k • written 21.4 years ago by ▴ 80
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873
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affy batch questions
hgu133a hgu133b hgu133a hgu133b
updated 22.1 years ago by ★ 13k • written 22.1 years ago by ▴ 20
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missing GO identifier in hgu133a GO
GO hgu133a hgu133b GO hgu133a hgu133b
updated 22.3 years ago by ★ 5.5k • written 22.3 years ago by ▴ 20
12 results • Page 1 of 1
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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
Votes
Answer: Unable to install nloptr
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C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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