Bioconductor Hg19

Showing : hg19 • reset

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653

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annotation hg19

8 months ago pcantalupo ▴ 10

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2.1k

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genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 4.8 years ago by James W. MacDonald 67k • written 4.8 years ago by foehn ▴ 100

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1.5k

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hg19 liftover matrixeqtl DMRcate

updated 5.7 years ago by James W. MacDonald 67k • written 5.7 years ago by yoursbassanio ▴ 10

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1.2k

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.2 years ago by Mike Smith ★ 6.6k • written 7.2 years ago by addyS • 0

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1.5k

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omiccircos bug hg19 hg18 data

7.7 years ago matthew.bashton • 0

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3.2k

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ucsc ucsctrack ggbio Gviz hg19

updated 7.9 years ago by maximilianh ▴ 10 • written 7.9 years ago by metamaden ▴ 10

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1.4k

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biomart hg19

8.3 years ago Stephane Plaisance | VIB | ▴ 60

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1.4k

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bsgenome hg19

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0