Bioconductor Hg19

Showing : hg19 • reset

votes

replies

756

views

annotation hg19

9 months ago pcantalupo ▴ 10

votes

replies

2.2k

views

genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by foehn ▴ 100

vote

replies

1.5k

views

hg19 liftover matrixeqtl DMRcate

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by yoursbassanio ▴ 10

votes

1.2k

views

bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.3 years ago by addyS • 0

votes

replies

1.5k

views

omiccircos bug hg19 hg18 data

7.8 years ago matthew.bashton • 0

vote

replies

3.3k

views

ucsc ucsctrack ggbio Gviz hg19

updated 8.1 years ago by maximilianh ▴ 10 • written 8.1 years ago by metamaden ▴ 10

votes

replies

1.5k

views

biomart hg19

8.4 years ago Stephane Plaisance | VIB | ▴ 60

votes

1.4k

views

bsgenome hg19

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

Recent ...

Replies

Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

Awards • All