Bioconductor Hg19

Showing : hg19 • reset

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799

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annotation hg19

10 months ago pcantalupo ▴ 10

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2.2k

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genomeinfodb hg19 ucsc seqlevel genomicfeatures

updated 5.0 years ago by James W. MacDonald 68k • written 5.0 years ago by foehn ▴ 100

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1.6k

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hg19 liftover matrixeqtl DMRcate

updated 5.9 years ago by James W. MacDonald 68k • written 5.9 years ago by yoursbassanio ▴ 10

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1.2k

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bsgenome.hsapiens.ucsc.hg19 hg19

updated 7.4 years ago by Mike Smith ★ 6.6k • written 7.4 years ago by addyS • 0

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1.5k

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omiccircos bug hg19 hg18 data

7.9 years ago matthew.bashton • 0

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3.3k

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ucsc ucsctrack ggbio Gviz hg19

updated 8.1 years ago by maximilianh ▴ 10 • written 8.1 years ago by metamaden ▴ 10

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1.5k

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biomart hg19

8.5 years ago Stephane Plaisance | VIB | ▴ 60

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1.4k

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bsgenome hg19

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by Lakshmanan Iyer ▴ 250

8 results • Page 1 of 1

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Comment: Differential expression analysis using two TCGA datasets by ATpoint ★ 4.8k

If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…

Comment: PhD scholar by ATpoint ★ 4.8k

Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…

Answer: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Votes

Having Trouble Using CNE12() and CNE21() in CNEr

Answer: Having Trouble Using CNE12() and CNE21() in CNEr

annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

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Popular Question to Ariel Chernomoretz ▴ 170