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hg19
•
reset
2
votes
2
replies
736
views
Get gene symbols for a set of hg19 coordinates
annotation
hg19
9 months ago
pcantalupo
▴ 10
2
votes
3
replies
2.1k
views
Error "cannot map the following UCSC seqlevel(s) to an NCBI seqlevel" in package GenomeDbInfo
genomeinfodb
hg19
ucsc
seqlevel
genomicfeatures
updated 4.9 years ago by
James W. MacDonald
68k • written 4.9 years ago by
foehn
▴ 100
1
vote
3
replies
1.5k
views
DMRcate liftover to grch38
hg19
liftover
matrixeqtl
DMRcate
updated 5.8 years ago by
James W. MacDonald
68k • written 5.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
1.2k
views
Identifying long stretches of Ns in hg19
bsgenome.hsapiens.ucsc.hg19
hg19
updated 7.3 years ago by
Mike Smith
★ 6.6k • written 7.3 years ago by
addyS
• 0
0
votes
0
replies
1.5k
views
OmicCircos: included UCSC.hg19.chr dataframe is actually hg18 cytobands
omiccircos
bug
hg19
hg18
data
7.8 years ago
matthew.bashton
• 0
1
vote
4
replies
3.2k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc
ucsctrack
ggbio
Gviz
hg19
updated 8.0 years ago by
maximilianh
▴ 10 • written 8.0 years ago by
metamaden
▴ 10
2
votes
4
replies
1.5k
views
BiomaRT inconsistency for PDGFRA, returns FIP1L1 instead
biomart
hg19
8.4 years ago
Stephane Plaisance | VIB |
▴ 60
0
votes
1
reply
1.4k
views
BSgenome.Hsapiens.UCSC.hg19 Sequence missing
bsgenome
hg19
updated 9.4 years ago by
Martin Morgan
25k • written 9.5 years ago by
Lakshmanan Iyer
▴ 250
8 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Answer: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…
Comment: Problem using locateVariants() from the VariantAnnotation package
by
Marco
• 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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Matthew McCormack
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James W. MacDonald
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• 0
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