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Heatmap RNA-seqanalysis heatmaps DESeq2

updated 13 months ago by Basti ▴ 780 • written 13 months ago by langziv • 0

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Cytoscape Heatmap heatmaps WGCNA

22 months ago gianni.drm • 0

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DESeq2 LRT Heatmap

updated 14 months ago by James W. MacDonald 67k • written 2.1 years ago by Laia ▴ 10

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Heatmap ComplexHeatmap colorRamp

3.7 years ago Assa Yeroslaviz ★ 1.5k

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784

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Givz heatmap overlap combine information

4.6 years ago kris.petrini • 0

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heatmap coolmap pheatmap

updated 4.7 years ago by Gordon Smyth 52k • written 4.7 years ago by Raito92 ▴ 60

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heatmap r studio log2foldchange

updated 4.8 years ago by Steve Lianoglou ★ 13k • written 4.8 years ago by alirezabcsaeidi • 0

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892

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GeneOverlap multiple figures heatmap

updated 4.9 years ago by James W. MacDonald 67k • written 4.9 years ago by C T ▴ 140

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WGCNA Heatmap EigenGeneNetworks

5.2 years ago l.s.wijaya • 0

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GOexpress heatmap gene ontology plot

updated 5.2 years ago by kevin.rue ▴ 350 • written 5.2 years ago by Antonio Campos • 0

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matrix heatmap ComplexHeatmap missing values R

updated 5.3 years ago by Zuguang Gu ▴ 290 • written 5.3 years ago by mohammedtoufiq91 ▴ 10

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consensusclusterplus heatmap

5.4 years ago niki.nowhere • 0

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heatmap DEGs RNAseq DESeq2

updated 5.4 years ago by mikhael.manurung ▴ 280 • written 5.4 years ago by danikadigiacomo • 0

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deseq2 RNA-seq Heatmap

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by Merlin ▴ 10

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sva deseq2 batch effect PCA heatmap

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by bioyas ▴ 10

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clusterProfiler heatmap GOAnalysis

5.6 years ago anthony.nash ▴ 20

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HeatMap Cairo Graphics Device Failed to create Cairo backend seqplots

updated 5.8 years ago by shepherl 4.1k • written 5.8 years ago by Marcelo Laia ▴ 450

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annotation heatmap

updated 5.9 years ago by James W. MacDonald 67k • written 5.9 years ago by shuvadeep.maity • 0

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821

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r R heatmap

6.0 years ago coyoung ▴ 10

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SC3 plot consensus marker heatmap

updated 6.0 years ago by Vladimir Kiselev ▴ 150 • written 6.1 years ago by shaktirielland • 0

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heatmap.3 heatmap

updated 6.0 years ago by James W. MacDonald 67k • written 6.0 years ago by Ahdee ▴ 50

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limma normalization heatmap design and contrast matrix cancer

updated 6.2 years ago by Axel Klenk ★ 1.0k • written 6.2 years ago by andreilazar9 • 0

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PureCN heatmap likelihoods

6.2 years ago twtoal ▴ 10

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PureCN Solution Heatmap

updated 6.3 years ago by markus.riester ▴ 130 • written 6.3 years ago by twtoal ▴ 10

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edger heatmap clustering differential gene expression rnaseq

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by Beginner ▴ 60

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heatmap chippeakanno

updated 6.7 years ago by Ou, Jianhong ★ 1.3k • written 6.7 years ago by gdeniz • 0

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limma heatmap DEGs

updated 6.9 years ago by Gordon Smyth 52k • written 6.9 years ago by lawarde.ankita1 ▴ 30

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gut microbiome heatmap metagenomeseq

updated 6.9 years ago by Joseph Nathaniel Paulson ▴ 280 • written 6.9 years ago by arguello.rguez • 0

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diffbind labels heatmap

updated 7.0 years ago by Rory Stark ★ 5.2k • written 7.1 years ago by epstein • 0

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compEpiTools error heatmap

updated 7.2 years ago by mattia pelizzola ▴ 200 • written 7.2 years ago by ma1478 • 0

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phyloseq heatmap

updated 7.3 years ago by Wolfgang Huber ★ 13k • written 7.3 years ago by newmanss • 0

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rnaseq ruvseq heatmap

updated 7.5 years ago by James W. MacDonald 67k • written 7.5 years ago by manish20072013 • 0

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deseq2 tpm heatmap pheatmap

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by jarod_v6@libero.it ▴ 40

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deseq2 rlog transformation heatmap scale

7.7 years ago lina.faller ▴ 10

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cummerbund heatmap

7.7 years ago domenico.somma • 0

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heatmap R bioconductor

9.4 years ago • updated 7.7 years ago Deepak Tanwar ▴ 10

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cummerbund heatmap isoforms transcript_id

7.7 years ago domenico.somma • 0

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diffbind heatmap correlation

updated 7.8 years ago by Rory Stark ★ 5.2k • written 7.8 years ago by a.bahraini88 • 0

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metagenomeseq heatmap

updated 7.8 years ago by James W. MacDonald 67k • written 7.8 years ago by Key • 0

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heatmap

written 8.7 years ago by giroudpaul ▴ 40

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3.9k

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complexheatmap heatmap.2 dendrogram dendextend heatmap

updated 8.2 years ago by jokergoo ▴ 200 • written 8.2 years ago by enricoferrero ▴ 660

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pheatmap heatmap

8.2 years ago jarod_v6@libero.it ▴ 40

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R heatmap

8.3 years ago Adam • 0

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1.9k

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diffbind heatmap pearsoncorrelation

updated 8.5 years ago by Rory Stark ★ 5.2k • written 8.5 years ago by shubhibartaria ▴ 10

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diffbind heatmap

8.5 years ago shubhibartaria ▴ 10

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complexheatmap bioconductor annotation heatmap legend

8.6 years ago • updated 8.5 years ago annkatrin.goepfert ▴ 10

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deseq2 time course heatmap

updated 8.5 years ago by EagleEye ▴ 10 • written 8.5 years ago by rahel14350 ▴ 10

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deseq2 heatmap

updated 8.5 years ago by Steve Lianoglou ★ 13k • written 8.5 years ago by l.weissenburgermoser • 0

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Heatmap

updated 8.6 years ago by Aaron Lun ★ 28k • written 8.6 years ago by rkp • 0

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heatmap.2 heatmap edgeR deseq2 deseq

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by Zain A Alvi ▴ 10

50 results • Page 1 of 1

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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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